Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04264 and SMc04265 are separated by 132 nucleotides SMc04265 and SMc04266 overlap by 17 nucleotides SMc04266 and SMc04268 are separated by 236 nucleotides
SMc04264: SMc04264 - transcriptional regulator, at 2,094,373 to 2,095,263
SMc04264
SMc04265: SMc04265 - hypothetical protein, at 2,095,396 to 2,095,839
SMc04265
SMc04266: SMc04266 - hypothetical protein, at 2,095,823 to 2,096,176
SMc04266
SMc04268: SMc04268 - lipid A biosynthesis lauroyl acyltransferase, at 2,096,413 to 2,097,351
SMc04268
Position (kb)
2095
2096 Strain fitness (log2 ratio)
-2
-1
0
1 at 2094.484 kb on + strand, within SMc04264 at 2094.604 kb on + strand, within SMc04264 at 2094.875 kb on + strand, within SMc04264 at 2095.136 kb on - strand, within SMc04264 at 2095.320 kb on + strand at 2095.370 kb on + strand at 2095.370 kb on + strand at 2095.370 kb on + strand at 2095.371 kb on - strand at 2095.371 kb on - strand at 2095.373 kb on - strand at 2095.456 kb on + strand, within SMc04265 at 2095.456 kb on + strand, within SMc04265 at 2095.457 kb on - strand, within SMc04265 at 2095.457 kb on - strand, within SMc04265 at 2095.457 kb on - strand, within SMc04265 at 2095.822 kb on - strand at 2095.837 kb on + strand at 2095.838 kb on - strand at 2095.850 kb on - strand at 2095.856 kb on + strand at 2095.857 kb on - strand at 2095.857 kb on - strand at 2096.030 kb on + strand, within SMc04266 at 2096.031 kb on - strand, within SMc04266 at 2096.095 kb on + strand, within SMc04266 at 2096.096 kb on - strand, within SMc04266 at 2096.096 kb on - strand, within SMc04266 at 2096.148 kb on - strand at 2096.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 2,094,484 + SMc04264 0.12 +0.0 2,094,604 + SMc04264 0.26 -0.3 2,094,875 + SMc04264 0.56 +0.6 2,095,136 - SMc04264 0.86 -0.1 2,095,320 + +0.1 2,095,370 + -1.3 2,095,370 + -0.0 2,095,370 + -2.4 2,095,371 - -1.1 2,095,371 - -0.0 2,095,373 - -0.8 2,095,456 + SMc04265 0.14 -0.9 2,095,456 + SMc04265 0.14 -1.5 2,095,457 - SMc04265 0.14 -0.6 2,095,457 - SMc04265 0.14 -0.2 2,095,457 - SMc04265 0.14 -0.4 2,095,822 - +0.1 2,095,837 + +0.1 2,095,838 - -0.5 2,095,850 - -0.2 2,095,856 + -0.1 2,095,857 - +0.2 2,095,857 - -0.3 2,096,030 + SMc04266 0.58 -0.1 2,096,031 - SMc04266 0.59 -0.9 2,096,095 + SMc04266 0.77 -0.1 2,096,096 - SMc04266 0.77 +0.8 2,096,096 - SMc04266 0.77 -0.3 2,096,148 - +0.3 2,096,181 - +0.3
Or see this region's nucleotide sequence