Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02496 and SMc02495 are separated by 175 nucleotides SMc02495 and SMc02494 are separated by 80 nucleotides
SMc02496: SMc02496 - primosome assembly protein PriA, at 3,296,436 to 3,298,640
SMc02496
SMc02495: SMc02495 - translaldolase, at 3,298,816 to 3,299,469
SMc02495
SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079
SMc02494
Position (kb)
3298
3299
3300 Strain fitness (log2 ratio)
-2
-1
0
1 at 3298.606 kb on - strand at 3299.221 kb on - strand, within SMc02495 at 3299.282 kb on - strand, within SMc02495 at 3299.614 kb on + strand at 3299.615 kb on - strand at 3299.700 kb on + strand at 3299.701 kb on - strand at 3299.782 kb on + strand, within SMc02494 at 3299.900 kb on - strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.975 kb on - strand, within SMc02494 at 3300.036 kb on - strand, within SMc02494 at 3300.121 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.150 kb on - strand, within SMc02494 at 3300.379 kb on - strand, within SMc02494 at 3300.469 kb on + strand, within SMc02494 at 3300.469 kb on + strand, within SMc02494
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 3,298,606 - -0.2 3,299,221 - SMc02495 0.62 -2.2 3,299,282 - SMc02495 0.71 -1.5 3,299,614 + -0.3 3,299,615 - +0.5 3,299,700 + +0.4 3,299,701 - +0.9 3,299,782 + SMc02494 0.15 +1.1 3,299,900 - SMc02494 0.23 -0.0 3,299,953 + SMc02494 0.26 -0.9 3,299,953 + SMc02494 0.26 +0.0 3,299,953 + SMc02494 0.26 +0.5 3,299,953 + SMc02494 0.26 +0.2 3,299,975 - SMc02494 0.28 -0.4 3,300,036 - SMc02494 0.32 -0.5 3,300,121 + SMc02494 0.37 +0.2 3,300,149 + SMc02494 0.39 -0.4 3,300,149 + SMc02494 0.39 -0.4 3,300,149 + SMc02494 0.39 -0.3 3,300,149 + SMc02494 0.39 +0.7 3,300,149 + SMc02494 0.39 +1.0 3,300,149 + SMc02494 0.39 +0.2 3,300,150 - SMc02494 0.39 -0.3 3,300,379 - SMc02494 0.54 +0.6 3,300,469 + SMc02494 0.60 +0.1 3,300,469 + SMc02494 0.60 -0.4
Or see this region's nucleotide sequence