Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00009 and SMc00010 are separated by 19 nucleotides SMc00010 and SMc00450 overlap by 4 nucleotides
SMc00009: SMc00009 - cytochrome C oxidase subunit II protein, at 992,038 to 992,922
SMc00009
SMc00010: SMc00010 - cytochrome C oxidase polypeptide I transmembrane protein, at 992,942 to 994,630
SMc00010
SMc00450: SMc00450 - protoheme IX farnesyltransferase, at 994,627 to 995,679
SMc00450
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.185 kb on + strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.186 kb on - strand, within SMc00009 at 992.298 kb on + strand, within SMc00009 at 992.455 kb on + strand, within SMc00009 at 992.725 kb on + strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.726 kb on - strand, within SMc00009 at 992.728 kb on + strand, within SMc00009 at 992.729 kb on - strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.767 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 992.806 kb on + strand, within SMc00009 at 993.191 kb on + strand, within SMc00010 at 994.200 kb on - strand, within SMc00010 at 994.220 kb on + strand, within SMc00010 at 994.298 kb on + strand, within SMc00010 at 994.722 kb on + strand at 995.143 kb on + strand, within SMc00450 at 995.155 kb on + strand, within SMc00450 at 995.420 kb on - strand, within SMc00450
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 992,185 + SMc00009 0.17 +1.0 992,185 + SMc00009 0.17 +0.5 992,185 + SMc00009 0.17 +1.0 992,186 - SMc00009 0.17 -1.5 992,186 - SMc00009 0.17 +1.0 992,298 + SMc00009 0.29 -0.9 992,455 + SMc00009 0.47 +0.3 992,725 + SMc00009 0.78 +0.3 992,726 - SMc00009 0.78 -2.3 992,726 - SMc00009 0.78 +0.4 992,728 + SMc00009 0.78 +0.0 992,729 - SMc00009 0.78 -1.8 992,767 + SMc00009 0.82 -0.4 992,767 + SMc00009 0.82 -0.5 992,767 + SMc00009 0.82 -0.1 992,806 + SMc00009 0.87 -0.2 992,806 + SMc00009 0.87 +0.4 993,191 + SMc00010 0.15 -1.1 994,200 - SMc00010 0.74 -1.4 994,220 + SMc00010 0.76 -3.1 994,298 + SMc00010 0.80 -1.0 994,722 + -0.3 995,143 + SMc00450 0.49 -1.9 995,155 + SMc00450 0.50 -1.6 995,420 - SMc00450 0.75 -2.9
Or see this region's nucleotide sequence