Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1697 and SMa1698 are separated by 260 nucleotides SMa1698 and SMa1700 are separated by 576 nucleotides SMa1700 and SMa1702 are separated by 146 nucleotides
SMa1697: SMa1697 - hypothetical protein, at 957,068 to 957,667
SMa1697
SMa1698: SMa1698 - syrB1 regulator, at 957,928 to 958,383
SMa1698
SMa1700: SMa1700 - hypothetical protein, at 958,960 to 959,169
SMa1700
SMa1702: SMa1702 - hypothetical protein, at 959,316 to 959,909
SMa1702
Position (kb) 957
958
959 Strain fitness (log2 ratio) -1
0
1
2 at 956.994 kb on - strand at 957.048 kb on - strand at 957.048 kb on - strand at 957.419 kb on + strand, within SMa1697 at 957.500 kb on + strand, within SMa1697 at 957.688 kb on - strand at 957.741 kb on - strand at 957.741 kb on - strand at 957.878 kb on - strand at 958.118 kb on + strand, within SMa1698 at 958.132 kb on + strand, within SMa1698 at 958.133 kb on - strand, within SMa1698 at 958.149 kb on + strand, within SMa1698 at 958.365 kb on + strand at 958.368 kb on + strand at 958.400 kb on + strand at 958.401 kb on - strand at 958.556 kb on - strand at 958.583 kb on + strand at 958.583 kb on + strand at 958.583 kb on + strand at 958.680 kb on - strand at 958.695 kb on - strand at 958.697 kb on - strand at 958.719 kb on + strand at 958.720 kb on - strand at 958.795 kb on + strand at 958.795 kb on + strand at 958.796 kb on - strand at 958.796 kb on - strand at 958.876 kb on - strand at 959.113 kb on + strand, within SMa1700 at 959.114 kb on - strand, within SMa1700 at 959.205 kb on - strand at 959.299 kb on + strand at 959.299 kb on + strand at 959.299 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 956,994 - -0.5 957,048 - +0.1 957,048 - +0.5 957,419 + SMa1697 0.58 -0.9 957,500 + SMa1697 0.72 -0.4 957,688 - +1.0 957,741 - -0.2 957,741 - +0.9 957,878 - -0.9 958,118 + SMa1698 0.42 -1.3 958,132 + SMa1698 0.45 +0.1 958,133 - SMa1698 0.45 -0.8 958,149 + SMa1698 0.48 -0.7 958,365 + -1.1 958,368 + +0.5 958,400 + -0.6 958,401 - +0.1 958,556 - +0.3 958,583 + +1.2 958,583 + -0.1 958,583 + -0.8 958,680 - +1.0 958,695 - +0.2 958,697 - +1.0 958,719 + -1.3 958,720 - -0.3 958,795 + +0.0 958,795 + +2.0 958,796 - -0.4 958,796 - +0.4 958,876 - -0.2 959,113 + SMa1700 0.73 +0.1 959,114 - SMa1700 0.73 -0.3 959,205 - +0.9 959,299 + -0.5 959,299 + -0.2 959,299 + +0.2
Or see this region's nucleotide sequence