Strain Fitness in Sinorhizobium meliloti 1021 around SMa0988

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0983 and SMa0985 are separated by 120 nucleotidesSMa0985 and SMa0988 are separated by 26 nucleotidesSMa0988 and SMa0990 are separated by 657 nucleotides SMa0983: SMa0983 - hypothetical protein, at 547,033 to 547,404 SMa0983 SMa0985: SMa0985 - LysR family transcriptional regulator, at 547,525 to 548,370 SMa0985 SMa0988: SMa0988 - hypothetical protein, at 548,397 to 548,690 SMa0988 SMa0990: SMa0990 - hypothetical protein, at 549,348 to 549,827 SMa0990 Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1at 547.559 kb on - strandat 547.908 kb on - strand, within SMa0985at 547.981 kb on + strand, within SMa0985at 547.981 kb on + strand, within SMa0985at 547.981 kb on + strand, within SMa0985at 547.981 kb on + strand, within SMa0985at 547.981 kb on + strand, within SMa0985at 547.982 kb on - strand, within SMa0985at 547.982 kb on - strand, within SMa0985at 547.997 kb on + strand, within SMa0985at 547.997 kb on + strand, within SMa0985at 548.137 kb on + strand, within SMa0985at 548.161 kb on - strand, within SMa0985at 548.177 kb on + strand, within SMa0985at 548.177 kb on + strand, within SMa0985at 548.177 kb on + strand, within SMa0985at 548.178 kb on - strand, within SMa0985at 548.178 kb on - strand, within SMa0985at 548.178 kb on - strand, within SMa0985at 548.245 kb on + strand, within SMa0985at 548.246 kb on - strand, within SMa0985at 548.437 kb on - strand, within SMa0988at 548.492 kb on + strand, within SMa0988at 548.493 kb on - strand, within SMa0988at 548.510 kb on + strand, within SMa0988at 548.510 kb on + strand, within SMa0988at 548.510 kb on + strand, within SMa0988at 548.510 kb on + strand, within SMa0988at 548.514 kb on + strand, within SMa0988at 548.522 kb on + strand, within SMa0988at 548.523 kb on - strand, within SMa0988at 548.523 kb on - strandat 548.608 kb on - strand, within SMa0988at 548.660 kb on + strand, within SMa0988at 548.660 kb on + strand, within SMa0988at 548.661 kb on - strandat 548.661 kb on - strandat 548.674 kb on - strandat 548.724 kb on + strandat 548.725 kb on - strandat 548.919 kb on - strandat 548.919 kb on - strandat 549.238 kb on + strandat 549.238 kb on + strandat 549.238 kb on + strandat 549.239 kb on - strandat 549.330 kb on + strandat 549.331 kb on - strandat 549.331 kb on - strandat 549.331 kb on - strandat 549.627 kb on + strand, within SMa0990at 549.661 kb on + strand, within SMa0990

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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547,559 - -0.1
547,908 - SMa0985 0.45 +0.4
547,981 + SMa0985 0.54 -0.5
547,981 + SMa0985 0.54 -0.2
547,981 + SMa0985 0.54 -0.4
547,981 + SMa0985 0.54 -0.3
547,981 + SMa0985 0.54 -0.1
547,982 - SMa0985 0.54 -0.3
547,982 - SMa0985 0.54 -0.5
547,997 + SMa0985 0.56 -0.1
547,997 + SMa0985 0.56 +0.5
548,137 + SMa0985 0.72 -0.1
548,161 - SMa0985 0.75 -0.4
548,177 + SMa0985 0.77 -0.8
548,177 + SMa0985 0.77 +0.5
548,177 + SMa0985 0.77 -0.0
548,178 - SMa0985 0.77 -0.1
548,178 - SMa0985 0.77 -0.7
548,178 - SMa0985 0.77 +1.0
548,245 + SMa0985 0.85 +0.3
548,246 - SMa0985 0.85 +0.3
548,437 - SMa0988 0.14 -0.5
548,492 + SMa0988 0.32 -1.1
548,493 - SMa0988 0.33 -0.2
548,510 + SMa0988 0.38 +0.2
548,510 + SMa0988 0.38 +0.1
548,510 + SMa0988 0.38 +0.8
548,510 + SMa0988 0.38 -0.1
548,514 + SMa0988 0.40 -1.2
548,522 + SMa0988 0.43 -1.0
548,523 - SMa0988 0.43 +1.4
548,523 - +0.3
548,608 - SMa0988 0.72 -0.5
548,660 + SMa0988 0.89 -1.1
548,660 + SMa0988 0.89 +0.2
548,661 - +0.1
548,661 - +0.2
548,674 - -0.2
548,724 + -0.1
548,725 - +0.5
548,919 - -0.9
548,919 - +0.4
549,238 + -1.9
549,238 + -0.7
549,238 + +0.1
549,239 - +1.6
549,330 + -0.0
549,331 - -0.1
549,331 - +0.1
549,331 - -0.1
549,627 + SMa0990 0.58 +0.8
549,661 + SMa0990 0.65 +0.4

Or see this region's nucleotide sequence