Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0961 and SMa0964 are separated by 47 nucleotides SMa0964 and SMa0967 are separated by 148 nucleotides SMa0967 and SMa0969 are separated by 245 nucleotides
SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404
SMa0961
SMa0964: SMa0964 - hypothetical protein, at 539,452 to 539,682
SMa0964
SMa0967: SMa0967 - hypothetical protein, at 539,831 to 540,751
SMa0967
SMa0969: SMa0969 - Response regulator, at 540,997 to 541,746
SMa0969
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.866 kb on - strand, within SMa0961 at 538.934 kb on - strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.089 kb on - strand, within SMa0961 at 539.116 kb on - strand, within SMa0961 at 539.136 kb on + strand, within SMa0961 at 539.151 kb on + strand, within SMa0961 at 539.272 kb on + strand, within SMa0961 at 539.273 kb on - strand, within SMa0961 at 539.317 kb on + strand, within SMa0961 at 539.328 kb on + strand, within SMa0961 at 539.482 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.959 kb on - strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 539.985 kb on + strand, within SMa0967 at 540.014 kb on + strand, within SMa0967 at 540.018 kb on + strand, within SMa0967 at 540.018 kb on + strand, within SMa0967 at 540.019 kb on - strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.114 kb on + strand, within SMa0967 at 540.115 kb on - strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.144 kb on + strand, within SMa0967 at 540.145 kb on - strand, within SMa0967 at 540.261 kb on + strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.337 kb on - strand, within SMa0967 at 540.375 kb on + strand, within SMa0967 at 540.376 kb on - strand, within SMa0967 at 540.487 kb on - strand, within SMa0967 at 540.537 kb on + strand, within SMa0967 at 540.537 kb on + strand, within SMa0967 at 540.538 kb on - strand, within SMa0967 at 540.538 kb on - strand, within SMa0967 at 540.547 kb on + strand, within SMa0967 at 540.548 kb on - strand, within SMa0967 at 540.548 kb on - strand, within SMa0967 at 540.548 kb on - strand, within SMa0967 at 540.549 kb on + strand, within SMa0967 at 540.594 kb on + strand, within SMa0967 at 540.931 kb on + strand at 540.931 kb on + strand at 540.932 kb on - strand at 540.932 kb on - strand at 540.950 kb on + strand at 540.950 kb on + strand at 540.951 kb on - strand at 540.951 kb on - strand at 541.028 kb on - strand at 541.073 kb on - strand, within SMa0969 at 541.090 kb on - strand, within SMa0969 at 541.090 kb on - strand, within SMa0969 at 541.140 kb on - strand, within SMa0969 at 541.140 kb on - strand, within SMa0969 at 541.157 kb on + strand, within SMa0969 at 541.178 kb on + strand, within SMa0969 at 541.229 kb on + strand, within SMa0969 at 541.245 kb on - strand, within SMa0969 at 541.298 kb on - strand, within SMa0969 at 541.370 kb on - strand, within SMa0969 at 541.370 kb on - strand, within SMa0969 at 541.463 kb on + strand, within SMa0969 at 541.464 kb on - strand, within SMa0969 at 541.464 kb on - strand, within SMa0969 at 541.489 kb on + strand, within SMa0969 at 541.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 538,866 - SMa0961 0.25 +0.3 538,934 - SMa0961 0.35 -0.9 539,088 + SMa0961 0.56 +0.9 539,088 + SMa0961 0.56 +0.3 539,088 + SMa0961 0.56 -0.0 539,089 - SMa0961 0.56 -0.3 539,116 - SMa0961 0.60 -0.1 539,136 + SMa0961 0.63 +0.2 539,151 + SMa0961 0.65 -0.3 539,272 + SMa0961 0.82 +0.4 539,273 - SMa0961 0.82 -1.3 539,317 + SMa0961 0.88 -0.8 539,328 + SMa0961 0.89 -0.6 539,482 + SMa0964 0.13 +0.3 539,543 + SMa0964 0.39 -0.6 539,543 + SMa0964 0.39 +0.1 539,543 + SMa0964 0.39 -0.2 539,959 - SMa0967 0.14 +2.2 539,985 + SMa0967 0.17 +0.9 539,985 + SMa0967 0.17 -0.1 539,985 + SMa0967 0.17 -0.2 540,014 + SMa0967 0.20 -0.4 540,018 + SMa0967 0.20 -0.6 540,018 + SMa0967 0.20 -0.3 540,019 - SMa0967 0.20 -0.3 540,114 + SMa0967 0.31 -1.0 540,114 + SMa0967 0.31 -0.0 540,114 + SMa0967 0.31 -0.6 540,114 + SMa0967 0.31 +0.1 540,115 - SMa0967 0.31 +0.1 540,144 + SMa0967 0.34 -0.1 540,144 + SMa0967 0.34 +0.9 540,144 + SMa0967 0.34 -0.1 540,144 + SMa0967 0.34 -0.8 540,145 - SMa0967 0.34 +0.1 540,261 + SMa0967 0.47 -0.7 540,337 - SMa0967 0.55 -0.9 540,337 - SMa0967 0.55 -0.7 540,337 - SMa0967 0.55 -0.0 540,375 + SMa0967 0.59 -0.0 540,376 - SMa0967 0.59 -2.3 540,487 - SMa0967 0.71 -0.4 540,537 + SMa0967 0.77 -0.5 540,537 + SMa0967 0.77 -0.1 540,538 - SMa0967 0.77 +1.1 540,538 - SMa0967 0.77 -0.1 540,547 + SMa0967 0.78 +0.5 540,548 - SMa0967 0.78 -0.3 540,548 - SMa0967 0.78 -0.2 540,548 - SMa0967 0.78 -0.3 540,549 + SMa0967 0.78 -1.4 540,594 + SMa0967 0.83 -0.8 540,931 + -0.3 540,931 + +0.2 540,932 - -0.2 540,932 - -0.6 540,950 + -0.5 540,950 + +0.5 540,951 - -1.2 540,951 - +1.4 541,028 - -0.2 541,073 - SMa0969 0.10 -0.2 541,090 - SMa0969 0.12 -0.2 541,090 - SMa0969 0.12 +0.2 541,140 - SMa0969 0.19 -0.1 541,140 - SMa0969 0.19 -0.1 541,157 + SMa0969 0.21 +0.4 541,178 + SMa0969 0.24 +0.3 541,229 + SMa0969 0.31 +0.0 541,245 - SMa0969 0.33 -1.2 541,298 - SMa0969 0.40 -0.1 541,370 - SMa0969 0.50 -0.4 541,370 - SMa0969 0.50 +0.8 541,463 + SMa0969 0.62 -0.1 541,464 - SMa0969 0.62 -0.3 541,464 - SMa0969 0.62 +0.7 541,489 + SMa0969 0.66 -0.4 541,700 + +0.1
Or see this region's nucleotide sequence