Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21190 and SM_b21191 are separated by 9 nucleotides SM_b21191 and SM_b21192 are separated by 225 nucleotides
SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301
_b21190
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373
_b21192
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -2
-1
0
1 at 940.590 kb on + strand, within SM_b21190 at 940.590 kb on + strand, within SM_b21190 at 940.591 kb on - strand, within SM_b21190 at 940.660 kb on + strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.925 kb on - strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 941.039 kb on - strand, within SM_b21190 at 941.202 kb on + strand at 941.203 kb on - strand at 941.520 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.685 kb on - strand, within SM_b21191 at 941.793 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.234 kb on + strand, within SM_b21191 at 942.670 kb on + strand, within SM_b21191 at 942.671 kb on - strand, within SM_b21191 at 942.758 kb on - strand, within SM_b21191 at 943.069 kb on + strand at 943.497 kb on + strand, within SM_b21192 at 943.548 kb on + strand, within SM_b21192 at 943.632 kb on - strand, within SM_b21192 at 943.772 kb on + strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.014 kb on - strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 940,590 + SM_b21190 0.31 -0.0 940,590 + SM_b21190 0.31 -0.6 940,591 - SM_b21190 0.32 -0.2 940,660 + SM_b21190 0.38 -0.0 940,661 - SM_b21190 0.38 -0.6 940,661 - SM_b21190 0.38 -0.2 940,661 - SM_b21190 0.38 -0.2 940,661 - SM_b21190 0.38 -0.3 940,917 + SM_b21190 0.63 -0.0 940,917 + SM_b21190 0.63 -0.4 940,925 - SM_b21190 0.64 +1.0 940,963 + SM_b21190 0.67 -0.4 940,963 + SM_b21190 0.67 -0.5 941,039 - SM_b21190 0.75 +0.1 941,202 + +0.2 941,203 - -0.9 941,520 - SM_b21191 0.12 +0.2 941,636 - SM_b21191 0.18 -0.1 941,636 - SM_b21191 0.18 +0.5 941,685 - SM_b21191 0.21 +0.8 941,793 + SM_b21191 0.27 -1.0 942,217 + SM_b21191 0.51 -0.0 942,217 + SM_b21191 0.51 -0.7 942,234 + SM_b21191 0.51 -0.7 942,670 + SM_b21191 0.76 -0.5 942,671 - SM_b21191 0.76 -1.0 942,758 - SM_b21191 0.81 -2.1 943,069 + -0.1 943,497 + SM_b21192 0.16 +0.9 943,548 + SM_b21192 0.21 +0.3 943,632 - SM_b21192 0.29 +0.6 943,772 + SM_b21192 0.42 +0.6 943,773 - SM_b21192 0.42 -0.1 943,773 - SM_b21192 0.42 +0.6 944,013 + SM_b21192 0.65 +1.1 944,013 + SM_b21192 0.65 +0.7 944,014 - SM_b21192 0.66 +0.8 944,015 + SM_b21192 0.66 +0.6 944,015 + SM_b21192 0.66 -0.5 944,015 + SM_b21192 0.66 +1.6 944,015 + SM_b21192 0.66 +1.0 944,016 - SM_b21192 0.66 +0.5 944,016 - SM_b21192 0.66 +1.1 944,016 - SM_b21192 0.66 +0.4 944,016 - SM_b21192 0.66 +0.6 944,016 - SM_b21192 0.66 +0.7 944,016 - SM_b21192 0.66 +0.4
Or see this region's nucleotide sequence