Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21147

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21145 and SM_b21146 overlap by 4 nucleotidesSM_b21146 and SM_b21147 overlap by 1 nucleotidesSM_b21147 and SM_b21148 are separated by 188 nucleotides SM_b21145: SM_b21145 - choline uptake ABC transporter permease, at 889,554 to 890,753 _b21145 SM_b21146: SM_b21146 - choline uptake ABC transporter ATP-binding protein, at 890,750 to 891,688 _b21146 SM_b21147: SM_b21147 - choline uptake ABC transporter permease, at 891,688 to 892,425 _b21147 SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774 _b21148 Position (kb) 891 892 893Strain fitness (log2 ratio) -2 -1 0 1at 890.770 kb on - strandat 890.780 kb on + strandat 890.780 kb on + strandat 890.830 kb on + strandat 890.929 kb on - strand, within SM_b21146at 890.929 kb on - strand, within SM_b21146at 890.984 kb on + strand, within SM_b21146at 891.143 kb on + strand, within SM_b21146at 891.216 kb on + strand, within SM_b21146at 891.217 kb on - strand, within SM_b21146at 891.398 kb on + strand, within SM_b21146at 891.398 kb on + strand, within SM_b21146at 891.398 kb on + strand, within SM_b21146at 891.399 kb on - strand, within SM_b21146at 891.399 kb on - strand, within SM_b21146at 891.811 kb on + strand, within SM_b21147at 891.915 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.491 kb on + strandat 892.662 kb on + strandat 892.662 kb on + strandat 892.663 kb on - strandat 892.704 kb on + strandat 892.770 kb on + strand, within SM_b21148at 892.770 kb on + strand, within SM_b21148at 892.854 kb on - strand, within SM_b21148at 892.860 kb on - strand, within SM_b21148at 893.004 kb on + strand, within SM_b21148at 893.005 kb on - strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.078 kb on - strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.086 kb on - strand, within SM_b21148at 893.121 kb on + strand, within SM_b21148at 893.130 kb on + strand, within SM_b21148at 893.359 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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890,770 - +0.3
890,780 + -0.5
890,780 + -0.2
890,830 + +0.1
890,929 - SM_b21146 0.19 +1.0
890,929 - SM_b21146 0.19 -1.9
890,984 + SM_b21146 0.25 -0.6
891,143 + SM_b21146 0.42 +0.4
891,216 + SM_b21146 0.50 -0.9
891,217 - SM_b21146 0.50 +0.8
891,398 + SM_b21146 0.69 -0.1
891,398 + SM_b21146 0.69 +0.0
891,398 + SM_b21146 0.69 +0.1
891,399 - SM_b21146 0.69 +0.4
891,399 - SM_b21146 0.69 -0.2
891,811 + SM_b21147 0.17 -0.0
891,915 + SM_b21147 0.31 -0.4
892,060 + SM_b21147 0.50 -0.2
892,060 + SM_b21147 0.50 -2.1
892,060 + SM_b21147 0.50 -0.8
892,491 + -0.1
892,662 + -1.5
892,662 + -0.6
892,663 - -0.0
892,704 + -0.1
892,770 + SM_b21148 0.13 +0.4
892,770 + SM_b21148 0.13 +0.2
892,854 - SM_b21148 0.21 +0.2
892,860 - SM_b21148 0.21 -1.0
893,004 + SM_b21148 0.34 -0.2
893,005 - SM_b21148 0.34 +0.2
893,077 + SM_b21148 0.40 +0.1
893,077 + SM_b21148 0.40 +0.6
893,077 + SM_b21148 0.40 -0.1
893,077 + SM_b21148 0.40 -0.2
893,077 + SM_b21148 0.40 -0.0
893,077 + SM_b21148 0.40 +0.2
893,078 - SM_b21148 0.40 +0.4
893,085 + SM_b21148 0.41 +0.1
893,085 + SM_b21148 0.41 +0.2
893,085 + SM_b21148 0.41 +0.3
893,086 - SM_b21148 0.41 -0.3
893,121 + SM_b21148 0.44 -0.5
893,130 + SM_b21148 0.44 +0.9
893,359 - SM_b21148 0.64 -0.6
893,380 - SM_b21148 0.66 -0.4
893,380 - SM_b21148 0.66 +0.2

Or see this region's nucleotide sequence