Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20707 and SM_b20708 are separated by 1 nucleotides SM_b20708 and SM_b20709 are separated by 210 nucleotides SM_b20709 and SM_b20710 are separated by 495 nucleotides
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924
_b20708
SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692
_b20709
SM_b20710: SM_b20710 - dehydrogenase, at 1,512,188 to 1,513,075
_b20710
Position (kb)
1511
1512 Strain fitness (log2 ratio)
-1
0
1 at 1510.608 kb on + strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.654 kb on + strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.914 kb on + strand at 1510.978 kb on + strand at 1510.978 kb on + strand at 1511.052 kb on - strand at 1511.173 kb on + strand at 1511.241 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.439 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.481 kb on + strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.482 kb on - strand, within SM_b20709 at 1511.896 kb on + strand at 1512.162 kb on + strand at 1512.163 kb on - strand at 1512.163 kb on - strand at 1512.163 kb on - strand at 1512.185 kb on + strand at 1512.186 kb on - strand at 1512.186 kb on - strand at 1512.204 kb on + strand at 1512.204 kb on + strand at 1512.205 kb on - strand at 1512.205 kb on - strand at 1512.205 kb on - strand at 1512.535 kb on + strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710 at 1512.536 kb on - strand, within SM_b20710
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 1,510,608 + SM_b20708 0.43 +0.3 1,510,651 - SM_b20708 0.50 -0.7 1,510,651 - SM_b20708 0.50 +0.3 1,510,654 + SM_b20708 0.51 -0.3 1,510,655 - SM_b20708 0.51 +0.4 1,510,655 - SM_b20708 0.51 -0.7 1,510,655 - SM_b20708 0.51 +0.1 1,510,914 + +0.4 1,510,978 + +0.0 1,510,978 + +1.3 1,511,052 - +0.9 1,511,173 + +0.7 1,511,241 + SM_b20709 0.19 -0.3 1,511,342 + SM_b20709 0.37 +0.5 1,511,342 + SM_b20709 0.37 -1.4 1,511,342 + SM_b20709 0.37 -0.8 1,511,343 - SM_b20709 0.37 -1.3 1,511,343 - SM_b20709 0.37 +0.1 1,511,343 - SM_b20709 0.37 -0.5 1,511,343 - SM_b20709 0.37 -0.0 1,511,343 - SM_b20709 0.37 -0.1 1,511,349 - SM_b20709 0.38 -1.4 1,511,349 - SM_b20709 0.38 -0.6 1,511,349 - SM_b20709 0.38 +0.1 1,511,349 - SM_b20709 0.38 +0.2 1,511,439 + SM_b20709 0.54 -0.6 1,511,481 + SM_b20709 0.62 +0.6 1,511,481 + SM_b20709 0.62 +0.1 1,511,482 - SM_b20709 0.62 -0.4 1,511,482 - SM_b20709 0.62 -0.1 1,511,896 + -0.5 1,512,162 + -0.1 1,512,163 - -0.3 1,512,163 - -0.2 1,512,163 - +0.1 1,512,185 + -0.4 1,512,186 - +0.2 1,512,186 - +0.3 1,512,204 + -0.5 1,512,204 + +0.4 1,512,205 - +0.3 1,512,205 - -0.0 1,512,205 - -0.5 1,512,535 + SM_b20710 0.39 -0.1 1,512,536 - SM_b20710 0.39 +0.2 1,512,536 - SM_b20710 0.39 -0.2 1,512,536 - SM_b20710 0.39 -0.3
Or see this region's nucleotide sequence