Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20515 and SM_b20516 are separated by 67 nucleotides SM_b20516 and SM_b20517 are separated by 750 nucleotides
SM_b20515: SM_b20515 - chemotaxis methyltransferase, at 537,727 to 541,212
_b20515
SM_b20516: SM_b20516 - response regulator protein, at 541,280 to 541,606
_b20516
SM_b20517: SM_b20517 - hypothetical protein, at 542,357 to 542,647
_b20517
Position (kb) 541
542 Strain fitness (log2 ratio) -2
-1
0
1 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.522 kb on - strand, within SM_b20515 at 540.838 kb on + strand, within SM_b20515 at 540.907 kb on - strand at 541.032 kb on + strand at 541.123 kb on - strand at 541.123 kb on - strand at 541.123 kb on - strand at 541.463 kb on + strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.466 kb on - strand, within SM_b20516 at 541.573 kb on + strand, within SM_b20516 at 541.573 kb on + strand, within SM_b20516 at 541.574 kb on - strand at 541.604 kb on + strand at 541.675 kb on + strand at 541.677 kb on - strand at 541.715 kb on + strand at 541.972 kb on - strand at 542.140 kb on + strand at 542.141 kb on - strand at 542.215 kb on - strand at 542.215 kb on - strand at 542.308 kb on + strand at 542.309 kb on - strand at 542.321 kb on + strand at 542.322 kb on - strand at 542.358 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 540,327 - SM_b20515 0.75 +0.2 540,327 - SM_b20515 0.75 -0.1 540,327 - SM_b20515 0.75 +0.1 540,327 - SM_b20515 0.75 -0.6 540,358 + SM_b20515 0.75 +1.6 540,358 + SM_b20515 0.75 -0.0 540,358 + SM_b20515 0.75 -1.1 540,359 - SM_b20515 0.76 +0.5 540,359 - SM_b20515 0.76 -0.6 540,359 - SM_b20515 0.76 +0.1 540,359 - SM_b20515 0.76 -1.1 540,359 - SM_b20515 0.76 -1.2 540,522 - SM_b20515 0.80 +0.5 540,838 + SM_b20515 0.89 -0.4 540,907 - -0.5 541,032 + -0.7 541,123 - -0.6 541,123 - +0.2 541,123 - -0.4 541,463 + SM_b20516 0.56 -1.1 541,464 - SM_b20516 0.56 -0.2 541,464 - SM_b20516 0.56 -0.4 541,464 - SM_b20516 0.56 -0.2 541,466 - SM_b20516 0.57 +0.3 541,573 + SM_b20516 0.90 -1.0 541,573 + SM_b20516 0.90 -1.0 541,574 - +0.1 541,604 + -0.1 541,675 + -0.4 541,677 - -0.4 541,715 + +0.5 541,972 - -0.7 542,140 + -0.1 542,141 - -2.2 542,215 - -0.1 542,215 - -0.1 542,308 + -0.5 542,309 - +0.2 542,321 + +1.1 542,322 - +1.1 542,358 + +1.3 542,369 + -0.7 542,369 + -0.4 542,369 + +0.0
Or see this region's nucleotide sequence