Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20181

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20179 and SM_b20180 are separated by 3 nucleotidesSM_b20180 and SM_b20181 are separated by 54 nucleotidesSM_b20181 and SM_b20182 overlap by 26 nucleotidesSM_b20182 and SM_b20183 overlap by 4 nucleotides SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738 _b20179 SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221 _b20180 SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247 _b20181 SM_b20182: SM_b20182 - ABC transporter, at 199,222 to 200,001 _b20182 SM_b20183: SM_b20183 - ABC transporter ATP-binding protein, at 199,998 to 200,621 _b20183 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1at 197.340 kb on + strand, within SM_b20179at 197.341 kb on - strand, within SM_b20179at 197.562 kb on + strand, within SM_b20179at 197.562 kb on + strand, within SM_b20179at 197.562 kb on + strand, within SM_b20179at 197.948 kb on + strand, within SM_b20180at 197.967 kb on + strand, within SM_b20180at 197.968 kb on - strand, within SM_b20180at 197.971 kb on - strand, within SM_b20180at 197.971 kb on - strand, within SM_b20180at 197.971 kb on - strand, within SM_b20180at 198.071 kb on - strand, within SM_b20180at 198.159 kb on + strand, within SM_b20180at 198.159 kb on + strand, within SM_b20180at 198.159 kb on + strand, within SM_b20180at 198.160 kb on - strand, within SM_b20180at 198.160 kb on - strand, within SM_b20180at 198.160 kb on - strand, within SM_b20180at 198.400 kb on + strand, within SM_b20181at 198.401 kb on - strand, within SM_b20181at 198.568 kb on - strand, within SM_b20181at 198.568 kb on - strand, within SM_b20181at 198.711 kb on + strand, within SM_b20181at 198.917 kb on + strand, within SM_b20181at 198.933 kb on + strand, within SM_b20181at 198.933 kb on + strand, within SM_b20181at 198.987 kb on + strand, within SM_b20181at 199.245 kb on + strandat 199.272 kb on - strandat 199.409 kb on - strand, within SM_b20182at 199.532 kb on + strand, within SM_b20182at 199.579 kb on + strand, within SM_b20182at 199.579 kb on + strand, within SM_b20182at 199.580 kb on - strand, within SM_b20182at 199.580 kb on - strand, within SM_b20182at 199.580 kb on - strand, within SM_b20182at 199.580 kb on - strand, within SM_b20182at 199.806 kb on - strand, within SM_b20182at 199.873 kb on + strand, within SM_b20182at 199.910 kb on - strand, within SM_b20182at 199.910 kb on - strand, within SM_b20182

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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197,340 + SM_b20179 0.59 -0.7
197,341 - SM_b20179 0.59 -1.1
197,562 + SM_b20179 0.82 -0.7
197,562 + SM_b20179 0.82 +0.8
197,562 + SM_b20179 0.82 +0.6
197,948 + SM_b20180 0.43 +0.2
197,967 + SM_b20180 0.47 -0.0
197,968 - SM_b20180 0.47 +0.0
197,971 - SM_b20180 0.48 +0.3
197,971 - SM_b20180 0.48 +0.2
197,971 - SM_b20180 0.48 +0.5
198,071 - SM_b20180 0.69 +0.5
198,159 + SM_b20180 0.87 -1.0
198,159 + SM_b20180 0.87 -0.2
198,159 + SM_b20180 0.87 -0.6
198,160 - SM_b20180 0.87 +0.8
198,160 - SM_b20180 0.87 -0.2
198,160 - SM_b20180 0.87 -0.1
198,400 + SM_b20181 0.13 -0.9
198,401 - SM_b20181 0.13 -2.1
198,568 - SM_b20181 0.30 +0.5
198,568 - SM_b20181 0.30 -0.5
198,711 + SM_b20181 0.45 -0.2
198,917 + SM_b20181 0.66 -0.3
198,933 + SM_b20181 0.68 -1.2
198,933 + SM_b20181 0.68 -0.8
198,987 + SM_b20181 0.73 +0.2
199,245 + +0.3
199,272 - +0.9
199,409 - SM_b20182 0.24 -0.2
199,532 + SM_b20182 0.40 -0.7
199,579 + SM_b20182 0.46 -0.7
199,579 + SM_b20182 0.46 -0.3
199,580 - SM_b20182 0.46 +0.8
199,580 - SM_b20182 0.46 +0.4
199,580 - SM_b20182 0.46 +0.4
199,580 - SM_b20182 0.46 -0.1
199,806 - SM_b20182 0.75 -0.5
199,873 + SM_b20182 0.83 +0.1
199,910 - SM_b20182 0.88 +1.3
199,910 - SM_b20182 0.88 -0.4

Or see this region's nucleotide sequence