Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS37265 and RR42_RS37270 are separated by 676 nucleotides RR42_RS37270 and RR42_RS37275 are separated by 91 nucleotides RR42_RS37275 and RR42_RS37280 are separated by 172 nucleotides
RR42_RS37265: RR42_RS37265 - chemotaxis protein, at 3,832,008 to 3,833,564
_RS37265
RR42_RS37270: RR42_RS37270 - Fur family transcriptional regulator, at 3,834,241 to 3,834,687
_RS37270
RR42_RS37275: RR42_RS37275 - hypothetical protein, at 3,834,779 to 3,835,057
_RS37275
RR42_RS37280: RR42_RS37280 - structural protein MipA, at 3,835,230 to 3,836,027
_RS37280
Position (kb)
3834
3835 Strain fitness (log2 ratio)
-1
0
1
2 at 3833.573 kb on + strand at 3833.574 kb on - strand at 3833.574 kb on - strand at 3833.770 kb on + strand at 3834.138 kb on - strand at 3834.138 kb on - strand at 3834.261 kb on + strand at 3834.373 kb on + strand, within RR42_RS37270 at 3834.373 kb on + strand, within RR42_RS37270 at 3834.373 kb on + strand, within RR42_RS37270 at 3834.373 kb on + strand, within RR42_RS37270 at 3834.421 kb on + strand, within RR42_RS37270 at 3834.421 kb on + strand, within RR42_RS37270 at 3834.422 kb on - strand, within RR42_RS37270 at 3834.422 kb on - strand, within RR42_RS37270 at 3834.422 kb on - strand, within RR42_RS37270 at 3834.422 kb on - strand, within RR42_RS37270 at 3834.422 kb on - strand, within RR42_RS37270 at 3834.641 kb on + strand, within RR42_RS37270 at 3834.641 kb on + strand, within RR42_RS37270 at 3834.641 kb on + strand, within RR42_RS37270 at 3834.642 kb on - strand, within RR42_RS37270 at 3834.642 kb on - strand, within RR42_RS37270 at 3834.642 kb on - strand, within RR42_RS37270 at 3834.643 kb on + strand at 3834.644 kb on - strand at 3834.644 kb on - strand at 3834.689 kb on - strand at 3834.689 kb on - strand at 3835.055 kb on + strand at 3835.056 kb on - strand at 3835.169 kb on + strand at 3835.270 kb on + strand at 3835.270 kb on + strand at 3835.271 kb on - strand at 3835.271 kb on - strand at 3835.271 kb on - strand at 3835.340 kb on + strand, within RR42_RS37280 at 3835.341 kb on - strand, within RR42_RS37280 at 3835.372 kb on - strand, within RR42_RS37280 at 3835.425 kb on + strand, within RR42_RS37280 at 3835.426 kb on - strand, within RR42_RS37280 at 3835.426 kb on - strand, within RR42_RS37280 at 3835.485 kb on + strand, within RR42_RS37280 at 3835.486 kb on - strand, within RR42_RS37280 at 3835.502 kb on + strand, within RR42_RS37280 at 3835.502 kb on + strand, within RR42_RS37280 at 3835.503 kb on - strand, within RR42_RS37280 at 3835.503 kb on - strand, within RR42_RS37280
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,833,573 + +0.2 3,833,574 - -0.4 3,833,574 - +0.2 3,833,770 + +0.9 3,834,138 - -0.2 3,834,138 - -0.0 3,834,261 + -1.4 3,834,373 + RR42_RS37270 0.30 -0.1 3,834,373 + RR42_RS37270 0.30 -0.1 3,834,373 + RR42_RS37270 0.30 +0.5 3,834,373 + RR42_RS37270 0.30 -0.9 3,834,421 + RR42_RS37270 0.40 +0.7 3,834,421 + RR42_RS37270 0.40 -0.2 3,834,422 - RR42_RS37270 0.40 +1.0 3,834,422 - RR42_RS37270 0.40 +0.0 3,834,422 - RR42_RS37270 0.40 +0.1 3,834,422 - RR42_RS37270 0.40 +0.2 3,834,422 - RR42_RS37270 0.40 +0.9 3,834,641 + RR42_RS37270 0.89 +0.1 3,834,641 + RR42_RS37270 0.89 +0.4 3,834,641 + RR42_RS37270 0.89 -0.3 3,834,642 - RR42_RS37270 0.90 -0.2 3,834,642 - RR42_RS37270 0.90 -0.4 3,834,642 - RR42_RS37270 0.90 +0.5 3,834,643 + -0.4 3,834,644 - -0.3 3,834,644 - +0.1 3,834,689 - +0.6 3,834,689 - -0.0 3,835,055 + -0.2 3,835,056 - -0.1 3,835,169 + -0.2 3,835,270 + +0.3 3,835,270 + -1.5 3,835,271 - -0.0 3,835,271 - +0.6 3,835,271 - +0.5 3,835,340 + RR42_RS37280 0.14 -0.7 3,835,341 - RR42_RS37280 0.14 +0.4 3,835,372 - RR42_RS37280 0.18 -0.5 3,835,425 + RR42_RS37280 0.24 -0.0 3,835,426 - RR42_RS37280 0.25 -0.3 3,835,426 - RR42_RS37280 0.25 -0.3 3,835,485 + RR42_RS37280 0.32 +0.6 3,835,486 - RR42_RS37280 0.32 -0.0 3,835,502 + RR42_RS37280 0.34 +0.5 3,835,502 + RR42_RS37280 0.34 -0.3 3,835,503 - RR42_RS37280 0.34 +0.7 3,835,503 - RR42_RS37280 0.34 +2.7
Or see this region's nucleotide sequence