Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37270

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS37265 and RR42_RS37270 are separated by 676 nucleotidesRR42_RS37270 and RR42_RS37275 are separated by 91 nucleotidesRR42_RS37275 and RR42_RS37280 are separated by 172 nucleotides RR42_RS37265: RR42_RS37265 - chemotaxis protein, at 3,832,008 to 3,833,564 _RS37265 RR42_RS37270: RR42_RS37270 - Fur family transcriptional regulator, at 3,834,241 to 3,834,687 _RS37270 RR42_RS37275: RR42_RS37275 - hypothetical protein, at 3,834,779 to 3,835,057 _RS37275 RR42_RS37280: RR42_RS37280 - structural protein MipA, at 3,835,230 to 3,836,027 _RS37280 Position (kb) 3834 3835Strain fitness (log2 ratio) -1 0 1 2at 3833.573 kb on + strandat 3833.574 kb on - strandat 3833.574 kb on - strandat 3833.770 kb on + strandat 3834.138 kb on - strandat 3834.138 kb on - strandat 3834.261 kb on + strandat 3834.373 kb on + strand, within RR42_RS37270at 3834.373 kb on + strand, within RR42_RS37270at 3834.373 kb on + strand, within RR42_RS37270at 3834.373 kb on + strand, within RR42_RS37270at 3834.421 kb on + strand, within RR42_RS37270at 3834.421 kb on + strand, within RR42_RS37270at 3834.422 kb on - strand, within RR42_RS37270at 3834.422 kb on - strand, within RR42_RS37270at 3834.422 kb on - strand, within RR42_RS37270at 3834.422 kb on - strand, within RR42_RS37270at 3834.422 kb on - strand, within RR42_RS37270at 3834.641 kb on + strand, within RR42_RS37270at 3834.641 kb on + strand, within RR42_RS37270at 3834.641 kb on + strand, within RR42_RS37270at 3834.642 kb on - strand, within RR42_RS37270at 3834.642 kb on - strand, within RR42_RS37270at 3834.642 kb on - strand, within RR42_RS37270at 3834.643 kb on + strandat 3834.644 kb on - strandat 3834.644 kb on - strandat 3834.689 kb on - strandat 3834.689 kb on - strandat 3835.055 kb on + strandat 3835.056 kb on - strandat 3835.169 kb on + strandat 3835.270 kb on + strandat 3835.270 kb on + strandat 3835.271 kb on - strandat 3835.271 kb on - strandat 3835.271 kb on - strandat 3835.340 kb on + strand, within RR42_RS37280at 3835.341 kb on - strand, within RR42_RS37280at 3835.372 kb on - strand, within RR42_RS37280at 3835.425 kb on + strand, within RR42_RS37280at 3835.426 kb on - strand, within RR42_RS37280at 3835.426 kb on - strand, within RR42_RS37280at 3835.485 kb on + strand, within RR42_RS37280at 3835.486 kb on - strand, within RR42_RS37280at 3835.502 kb on + strand, within RR42_RS37280at 3835.502 kb on + strand, within RR42_RS37280at 3835.503 kb on - strand, within RR42_RS37280at 3835.503 kb on - strand, within RR42_RS37280

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,833,573 + +0.2
3,833,574 - -0.4
3,833,574 - +0.2
3,833,770 + +0.9
3,834,138 - -0.2
3,834,138 - -0.0
3,834,261 + -1.4
3,834,373 + RR42_RS37270 0.30 -0.1
3,834,373 + RR42_RS37270 0.30 -0.1
3,834,373 + RR42_RS37270 0.30 +0.5
3,834,373 + RR42_RS37270 0.30 -0.9
3,834,421 + RR42_RS37270 0.40 +0.7
3,834,421 + RR42_RS37270 0.40 -0.2
3,834,422 - RR42_RS37270 0.40 +1.0
3,834,422 - RR42_RS37270 0.40 +0.0
3,834,422 - RR42_RS37270 0.40 +0.1
3,834,422 - RR42_RS37270 0.40 +0.2
3,834,422 - RR42_RS37270 0.40 +0.9
3,834,641 + RR42_RS37270 0.89 +0.1
3,834,641 + RR42_RS37270 0.89 +0.4
3,834,641 + RR42_RS37270 0.89 -0.3
3,834,642 - RR42_RS37270 0.90 -0.2
3,834,642 - RR42_RS37270 0.90 -0.4
3,834,642 - RR42_RS37270 0.90 +0.5
3,834,643 + -0.4
3,834,644 - -0.3
3,834,644 - +0.1
3,834,689 - +0.6
3,834,689 - -0.0
3,835,055 + -0.2
3,835,056 - -0.1
3,835,169 + -0.2
3,835,270 + +0.3
3,835,270 + -1.5
3,835,271 - -0.0
3,835,271 - +0.6
3,835,271 - +0.5
3,835,340 + RR42_RS37280 0.14 -0.7
3,835,341 - RR42_RS37280 0.14 +0.4
3,835,372 - RR42_RS37280 0.18 -0.5
3,835,425 + RR42_RS37280 0.24 -0.0
3,835,426 - RR42_RS37280 0.25 -0.3
3,835,426 - RR42_RS37280 0.25 -0.3
3,835,485 + RR42_RS37280 0.32 +0.6
3,835,486 - RR42_RS37280 0.32 -0.0
3,835,502 + RR42_RS37280 0.34 +0.5
3,835,502 + RR42_RS37280 0.34 -0.3
3,835,503 - RR42_RS37280 0.34 +0.7
3,835,503 - RR42_RS37280 0.34 +2.7

Or see this region's nucleotide sequence