Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32040

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32035 and RR42_RS32040 are separated by 64 nucleotidesRR42_RS32040 and RR42_RS32045 overlap by 4 nucleotides RR42_RS32035: RR42_RS32035 - short-chain dehydrogenase, at 2,564,295 to 2,565,104 _RS32035 RR42_RS32040: RR42_RS32040 - esterase, at 2,565,169 to 2,566,161 _RS32040 RR42_RS32045: RR42_RS32045 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 2,566,158 to 2,567,282 _RS32045 Position (kb) 2565 2566 2567Strain fitness (log2 ratio) -2 -1 0 1 2at 2564.233 kb on - strandat 2564.761 kb on - strand, within RR42_RS32035at 2564.761 kb on - strand, within RR42_RS32035at 2564.762 kb on + strand, within RR42_RS32035at 2564.762 kb on + strand, within RR42_RS32035at 2565.364 kb on + strand, within RR42_RS32040at 2565.453 kb on + strand, within RR42_RS32040at 2565.454 kb on - strand, within RR42_RS32040at 2565.454 kb on - strand, within RR42_RS32040at 2565.709 kb on + strand, within RR42_RS32040at 2565.716 kb on - strand, within RR42_RS32040at 2565.716 kb on - strand, within RR42_RS32040at 2565.809 kb on - strand, within RR42_RS32040at 2566.644 kb on + strand, within RR42_RS32045at 2566.836 kb on + strand, within RR42_RS32045at 2566.876 kb on + strand, within RR42_RS32045at 2566.876 kb on + strand, within RR42_RS32045

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,564,233 - -0.3
2,564,761 - RR42_RS32035 0.58 -2.5
2,564,761 - RR42_RS32035 0.58 -0.6
2,564,762 + RR42_RS32035 0.58 -0.6
2,564,762 + RR42_RS32035 0.58 -1.7
2,565,364 + RR42_RS32040 0.20 +0.6
2,565,453 + RR42_RS32040 0.29 +0.2
2,565,454 - RR42_RS32040 0.29 +0.6
2,565,454 - RR42_RS32040 0.29 -0.2
2,565,709 + RR42_RS32040 0.54 +0.7
2,565,716 - RR42_RS32040 0.55 +0.2
2,565,716 - RR42_RS32040 0.55 +1.9
2,565,809 - RR42_RS32040 0.64 +0.9
2,566,644 + RR42_RS32045 0.43 -0.1
2,566,836 + RR42_RS32045 0.60 +0.1
2,566,876 + RR42_RS32045 0.64 -0.5
2,566,876 + RR42_RS32045 0.64 -0.5

Or see this region's nucleotide sequence