Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31520

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31515 and RR42_RS31520 are separated by 94 nucleotidesRR42_RS31520 and RR42_RS31525 are separated by 125 nucleotidesRR42_RS31525 and RR42_RS31530 overlap by 20 nucleotides RR42_RS31515: RR42_RS31515 - sugar transporter, at 2,448,503 to 2,449,621 _RS31515 RR42_RS31520: RR42_RS31520 - 2-nitropropane dioxygenase, at 2,449,716 to 2,450,834 _RS31520 RR42_RS31525: RR42_RS31525 - threonine transporter, at 2,450,960 to 2,451,601 _RS31525 RR42_RS31530: RR42_RS31530 - histidine kinase, at 2,451,582 to 2,453,042 _RS31530 Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -1 0 1 2at 2448.867 kb on + strand, within RR42_RS31515at 2448.868 kb on - strand, within RR42_RS31515at 2448.868 kb on - strand, within RR42_RS31515at 2448.868 kb on - strand, within RR42_RS31515at 2448.868 kb on - strand, within RR42_RS31515at 2449.127 kb on + strand, within RR42_RS31515at 2449.127 kb on + strand, within RR42_RS31515at 2449.127 kb on + strand, within RR42_RS31515at 2449.128 kb on - strand, within RR42_RS31515at 2449.149 kb on - strand, within RR42_RS31515at 2449.166 kb on + strand, within RR42_RS31515at 2449.166 kb on + strand, within RR42_RS31515at 2449.167 kb on - strand, within RR42_RS31515at 2449.216 kb on + strand, within RR42_RS31515at 2449.216 kb on + strand, within RR42_RS31515at 2449.217 kb on - strand, within RR42_RS31515at 2449.493 kb on + strand, within RR42_RS31515at 2449.494 kb on - strand, within RR42_RS31515at 2450.004 kb on + strand, within RR42_RS31520at 2450.064 kb on + strand, within RR42_RS31520at 2450.064 kb on + strand, within RR42_RS31520at 2450.064 kb on + strand, within RR42_RS31520at 2450.065 kb on - strand, within RR42_RS31520at 2450.344 kb on + strand, within RR42_RS31520at 2450.646 kb on + strand, within RR42_RS31520at 2450.647 kb on - strand, within RR42_RS31520at 2450.647 kb on - strand, within RR42_RS31520at 2450.700 kb on + strand, within RR42_RS31520at 2450.875 kb on + strandat 2450.875 kb on + strandat 2450.876 kb on - strandat 2450.876 kb on - strandat 2450.888 kb on + strandat 2450.888 kb on + strandat 2450.889 kb on - strandat 2450.889 kb on - strandat 2450.889 kb on - strandat 2451.083 kb on + strand, within RR42_RS31525at 2451.083 kb on + strand, within RR42_RS31525at 2451.084 kb on - strand, within RR42_RS31525at 2451.084 kb on - strand, within RR42_RS31525at 2451.176 kb on + strand, within RR42_RS31525at 2451.176 kb on + strand, within RR42_RS31525at 2451.176 kb on + strand, within RR42_RS31525at 2451.176 kb on + strand, within RR42_RS31525at 2451.177 kb on - strand, within RR42_RS31525at 2451.206 kb on + strand, within RR42_RS31525at 2451.206 kb on + strand, within RR42_RS31525at 2451.207 kb on - strand, within RR42_RS31525at 2451.207 kb on - strand, within RR42_RS31525at 2451.215 kb on + strand, within RR42_RS31525at 2451.216 kb on - strand, within RR42_RS31525at 2451.216 kb on - strand, within RR42_RS31525at 2451.369 kb on - strand, within RR42_RS31525at 2451.513 kb on - strand, within RR42_RS31525at 2451.555 kb on + strandat 2451.556 kb on - strandat 2451.599 kb on + strandat 2451.599 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,448,867 + RR42_RS31515 0.33 +0.1
2,448,868 - RR42_RS31515 0.33 -0.3
2,448,868 - RR42_RS31515 0.33 -0.1
2,448,868 - RR42_RS31515 0.33 +0.1
2,448,868 - RR42_RS31515 0.33 +0.0
2,449,127 + RR42_RS31515 0.56 -0.0
2,449,127 + RR42_RS31515 0.56 -0.0
2,449,127 + RR42_RS31515 0.56 -0.8
2,449,128 - RR42_RS31515 0.56 +0.1
2,449,149 - RR42_RS31515 0.58 -0.8
2,449,166 + RR42_RS31515 0.59 -0.6
2,449,166 + RR42_RS31515 0.59 +0.1
2,449,167 - RR42_RS31515 0.59 +1.2
2,449,216 + RR42_RS31515 0.64 +1.0
2,449,216 + RR42_RS31515 0.64 -0.1
2,449,217 - RR42_RS31515 0.64 -1.2
2,449,493 + RR42_RS31515 0.88 +1.0
2,449,494 - RR42_RS31515 0.89 -0.0
2,450,004 + RR42_RS31520 0.26 +1.1
2,450,064 + RR42_RS31520 0.31 -0.1
2,450,064 + RR42_RS31520 0.31 -0.6
2,450,064 + RR42_RS31520 0.31 -0.2
2,450,065 - RR42_RS31520 0.31 -0.4
2,450,344 + RR42_RS31520 0.56 +0.5
2,450,646 + RR42_RS31520 0.83 -1.2
2,450,647 - RR42_RS31520 0.83 -0.2
2,450,647 - RR42_RS31520 0.83 +0.3
2,450,700 + RR42_RS31520 0.88 +1.8
2,450,875 + +0.7
2,450,875 + -0.4
2,450,876 - +0.2
2,450,876 - +0.4
2,450,888 + -0.5
2,450,888 + -0.1
2,450,889 - +0.3
2,450,889 - -0.5
2,450,889 - +0.1
2,451,083 + RR42_RS31525 0.19 +0.4
2,451,083 + RR42_RS31525 0.19 -0.3
2,451,084 - RR42_RS31525 0.19 -0.2
2,451,084 - RR42_RS31525 0.19 +0.0
2,451,176 + RR42_RS31525 0.34 +0.1
2,451,176 + RR42_RS31525 0.34 +0.0
2,451,176 + RR42_RS31525 0.34 +0.1
2,451,176 + RR42_RS31525 0.34 +0.2
2,451,177 - RR42_RS31525 0.34 -1.4
2,451,206 + RR42_RS31525 0.38 -1.5
2,451,206 + RR42_RS31525 0.38 -1.0
2,451,207 - RR42_RS31525 0.38 +0.2
2,451,207 - RR42_RS31525 0.38 +0.3
2,451,215 + RR42_RS31525 0.40 +0.1
2,451,216 - RR42_RS31525 0.40 -1.5
2,451,216 - RR42_RS31525 0.40 -0.6
2,451,369 - RR42_RS31525 0.64 -0.6
2,451,513 - RR42_RS31525 0.86 +0.5
2,451,555 + +0.3
2,451,556 - +0.2
2,451,599 + +0.8
2,451,599 + -0.2

Or see this region's nucleotide sequence