Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31515 and RR42_RS31520 are separated by 94 nucleotides RR42_RS31520 and RR42_RS31525 are separated by 125 nucleotides RR42_RS31525 and RR42_RS31530 overlap by 20 nucleotides
RR42_RS31515: RR42_RS31515 - sugar transporter, at 2,448,503 to 2,449,621
_RS31515
RR42_RS31520: RR42_RS31520 - 2-nitropropane dioxygenase, at 2,449,716 to 2,450,834
_RS31520
RR42_RS31525: RR42_RS31525 - threonine transporter, at 2,450,960 to 2,451,601
_RS31525
RR42_RS31530: RR42_RS31530 - histidine kinase, at 2,451,582 to 2,453,042
_RS31530
Position (kb)
2449
2450
2451 Strain fitness (log2 ratio)
-1
0
1
2 at 2448.867 kb on + strand, within RR42_RS31515 at 2448.868 kb on - strand, within RR42_RS31515 at 2448.868 kb on - strand, within RR42_RS31515 at 2448.868 kb on - strand, within RR42_RS31515 at 2448.868 kb on - strand, within RR42_RS31515 at 2449.127 kb on + strand, within RR42_RS31515 at 2449.127 kb on + strand, within RR42_RS31515 at 2449.127 kb on + strand, within RR42_RS31515 at 2449.128 kb on - strand, within RR42_RS31515 at 2449.149 kb on - strand, within RR42_RS31515 at 2449.166 kb on + strand, within RR42_RS31515 at 2449.166 kb on + strand, within RR42_RS31515 at 2449.167 kb on - strand, within RR42_RS31515 at 2449.216 kb on + strand, within RR42_RS31515 at 2449.216 kb on + strand, within RR42_RS31515 at 2449.217 kb on - strand, within RR42_RS31515 at 2449.493 kb on + strand, within RR42_RS31515 at 2449.494 kb on - strand, within RR42_RS31515 at 2450.004 kb on + strand, within RR42_RS31520 at 2450.064 kb on + strand, within RR42_RS31520 at 2450.064 kb on + strand, within RR42_RS31520 at 2450.064 kb on + strand, within RR42_RS31520 at 2450.065 kb on - strand, within RR42_RS31520 at 2450.344 kb on + strand, within RR42_RS31520 at 2450.646 kb on + strand, within RR42_RS31520 at 2450.647 kb on - strand, within RR42_RS31520 at 2450.647 kb on - strand, within RR42_RS31520 at 2450.700 kb on + strand, within RR42_RS31520 at 2450.875 kb on + strand at 2450.875 kb on + strand at 2450.876 kb on - strand at 2450.876 kb on - strand at 2450.888 kb on + strand at 2450.888 kb on + strand at 2450.889 kb on - strand at 2450.889 kb on - strand at 2450.889 kb on - strand at 2451.083 kb on + strand, within RR42_RS31525 at 2451.083 kb on + strand, within RR42_RS31525 at 2451.084 kb on - strand, within RR42_RS31525 at 2451.084 kb on - strand, within RR42_RS31525 at 2451.176 kb on + strand, within RR42_RS31525 at 2451.176 kb on + strand, within RR42_RS31525 at 2451.176 kb on + strand, within RR42_RS31525 at 2451.176 kb on + strand, within RR42_RS31525 at 2451.177 kb on - strand, within RR42_RS31525 at 2451.206 kb on + strand, within RR42_RS31525 at 2451.206 kb on + strand, within RR42_RS31525 at 2451.207 kb on - strand, within RR42_RS31525 at 2451.207 kb on - strand, within RR42_RS31525 at 2451.215 kb on + strand, within RR42_RS31525 at 2451.216 kb on - strand, within RR42_RS31525 at 2451.216 kb on - strand, within RR42_RS31525 at 2451.369 kb on - strand, within RR42_RS31525 at 2451.513 kb on - strand, within RR42_RS31525 at 2451.555 kb on + strand at 2451.556 kb on - strand at 2451.599 kb on + strand at 2451.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,448,867 + RR42_RS31515 0.33 +0.1 2,448,868 - RR42_RS31515 0.33 -0.3 2,448,868 - RR42_RS31515 0.33 -0.1 2,448,868 - RR42_RS31515 0.33 +0.1 2,448,868 - RR42_RS31515 0.33 +0.0 2,449,127 + RR42_RS31515 0.56 -0.0 2,449,127 + RR42_RS31515 0.56 -0.0 2,449,127 + RR42_RS31515 0.56 -0.8 2,449,128 - RR42_RS31515 0.56 +0.1 2,449,149 - RR42_RS31515 0.58 -0.8 2,449,166 + RR42_RS31515 0.59 -0.6 2,449,166 + RR42_RS31515 0.59 +0.1 2,449,167 - RR42_RS31515 0.59 +1.2 2,449,216 + RR42_RS31515 0.64 +1.0 2,449,216 + RR42_RS31515 0.64 -0.1 2,449,217 - RR42_RS31515 0.64 -1.2 2,449,493 + RR42_RS31515 0.88 +1.0 2,449,494 - RR42_RS31515 0.89 -0.0 2,450,004 + RR42_RS31520 0.26 +1.1 2,450,064 + RR42_RS31520 0.31 -0.1 2,450,064 + RR42_RS31520 0.31 -0.6 2,450,064 + RR42_RS31520 0.31 -0.2 2,450,065 - RR42_RS31520 0.31 -0.4 2,450,344 + RR42_RS31520 0.56 +0.5 2,450,646 + RR42_RS31520 0.83 -1.2 2,450,647 - RR42_RS31520 0.83 -0.2 2,450,647 - RR42_RS31520 0.83 +0.3 2,450,700 + RR42_RS31520 0.88 +1.8 2,450,875 + +0.7 2,450,875 + -0.4 2,450,876 - +0.2 2,450,876 - +0.4 2,450,888 + -0.5 2,450,888 + -0.1 2,450,889 - +0.3 2,450,889 - -0.5 2,450,889 - +0.1 2,451,083 + RR42_RS31525 0.19 +0.4 2,451,083 + RR42_RS31525 0.19 -0.3 2,451,084 - RR42_RS31525 0.19 -0.2 2,451,084 - RR42_RS31525 0.19 +0.0 2,451,176 + RR42_RS31525 0.34 +0.1 2,451,176 + RR42_RS31525 0.34 +0.0 2,451,176 + RR42_RS31525 0.34 +0.1 2,451,176 + RR42_RS31525 0.34 +0.2 2,451,177 - RR42_RS31525 0.34 -1.4 2,451,206 + RR42_RS31525 0.38 -1.5 2,451,206 + RR42_RS31525 0.38 -1.0 2,451,207 - RR42_RS31525 0.38 +0.2 2,451,207 - RR42_RS31525 0.38 +0.3 2,451,215 + RR42_RS31525 0.40 +0.1 2,451,216 - RR42_RS31525 0.40 -1.5 2,451,216 - RR42_RS31525 0.40 -0.6 2,451,369 - RR42_RS31525 0.64 -0.6 2,451,513 - RR42_RS31525 0.86 +0.5 2,451,555 + +0.3 2,451,556 - +0.2 2,451,599 + +0.8 2,451,599 + -0.2
Or see this region's nucleotide sequence