Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28035 and RR42_RS28040 are separated by 111 nucleotides RR42_RS28040 and RR42_RS28045 are separated by 146 nucleotides RR42_RS28045 and RR42_RS28050 overlap by 8 nucleotides
RR42_RS28035: RR42_RS28035 - ABC transporter substrate-binding protein, at 1,650,249 to 1,651,226
_RS28035
RR42_RS28040: RR42_RS28040 - acyl-CoA synthetase, at 1,651,338 to 1,653,443
_RS28040
RR42_RS28045: RR42_RS28045 - 3-oxoacyl-ACP reductase, at 1,653,590 to 1,654,339
_RS28045
RR42_RS28050: RR42_RS28050 - 3-hydroxypropionyl-CoA dehydratase, at 1,654,332 to 1,655,114
_RS28050
Position (kb)
1651
1652
1653
1654 Strain fitness (log2 ratio)
-1
0
1
2 at 1650.565 kb on - strand, within RR42_RS28035 at 1650.579 kb on + strand, within RR42_RS28035 at 1650.580 kb on - strand, within RR42_RS28035 at 1650.580 kb on - strand, within RR42_RS28035 at 1650.805 kb on - strand, within RR42_RS28035 at 1651.225 kb on - strand at 1651.349 kb on + strand at 1651.434 kb on - strand at 1651.440 kb on + strand at 1651.441 kb on - strand at 1651.459 kb on - strand at 1651.459 kb on - strand at 1651.713 kb on + strand, within RR42_RS28040 at 1651.714 kb on - strand, within RR42_RS28040 at 1651.773 kb on + strand, within RR42_RS28040 at 1651.852 kb on - strand, within RR42_RS28040 at 1651.995 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.208 kb on - strand, within RR42_RS28040 at 1652.208 kb on - strand at 1652.208 kb on - strand, within RR42_RS28040 at 1652.244 kb on + strand, within RR42_RS28040 at 1652.245 kb on - strand, within RR42_RS28040 at 1652.508 kb on - strand, within RR42_RS28040 at 1652.511 kb on + strand, within RR42_RS28040 at 1652.512 kb on + strand, within RR42_RS28040 at 1653.063 kb on - strand, within RR42_RS28040 at 1653.884 kb on + strand, within RR42_RS28045 at 1654.184 kb on + strand, within RR42_RS28045 at 1654.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,650,565 - RR42_RS28035 0.32 +0.1 1,650,579 + RR42_RS28035 0.34 +0.4 1,650,580 - RR42_RS28035 0.34 +0.5 1,650,580 - RR42_RS28035 0.34 +0.5 1,650,805 - RR42_RS28035 0.57 +0.3 1,651,225 - +1.6 1,651,349 + +0.5 1,651,434 - -0.0 1,651,440 + -0.2 1,651,441 - +0.1 1,651,459 - +0.5 1,651,459 - -0.4 1,651,713 + RR42_RS28040 0.18 +0.3 1,651,714 - RR42_RS28040 0.18 -0.7 1,651,773 + RR42_RS28040 0.21 +2.3 1,651,852 - RR42_RS28040 0.24 -0.7 1,651,995 + RR42_RS28040 0.31 -0.1 1,652,207 + RR42_RS28040 0.41 +0.1 1,652,207 + RR42_RS28040 0.41 -0.3 1,652,207 + RR42_RS28040 0.41 -0.7 1,652,208 - RR42_RS28040 0.41 +0.5 1,652,208 - -0.2 1,652,208 - RR42_RS28040 0.41 +0.1 1,652,244 + RR42_RS28040 0.43 +0.9 1,652,245 - RR42_RS28040 0.43 -0.6 1,652,508 - RR42_RS28040 0.56 +0.2 1,652,511 + RR42_RS28040 0.56 +0.8 1,652,512 + RR42_RS28040 0.56 +1.6 1,653,063 - RR42_RS28040 0.82 -0.1 1,653,884 + RR42_RS28045 0.39 +0.2 1,654,184 + RR42_RS28045 0.79 -0.3 1,654,297 + +0.3
Or see this region's nucleotide sequence