Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28040

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28035 and RR42_RS28040 are separated by 111 nucleotidesRR42_RS28040 and RR42_RS28045 are separated by 146 nucleotidesRR42_RS28045 and RR42_RS28050 overlap by 8 nucleotides RR42_RS28035: RR42_RS28035 - ABC transporter substrate-binding protein, at 1,650,249 to 1,651,226 _RS28035 RR42_RS28040: RR42_RS28040 - acyl-CoA synthetase, at 1,651,338 to 1,653,443 _RS28040 RR42_RS28045: RR42_RS28045 - 3-oxoacyl-ACP reductase, at 1,653,590 to 1,654,339 _RS28045 RR42_RS28050: RR42_RS28050 - 3-hydroxypropionyl-CoA dehydratase, at 1,654,332 to 1,655,114 _RS28050 Position (kb) 1651 1652 1653 1654Strain fitness (log2 ratio) -1 0 1 2at 1650.565 kb on - strand, within RR42_RS28035at 1650.579 kb on + strand, within RR42_RS28035at 1650.580 kb on - strand, within RR42_RS28035at 1650.580 kb on - strand, within RR42_RS28035at 1650.805 kb on - strand, within RR42_RS28035at 1651.225 kb on - strandat 1651.349 kb on + strandat 1651.434 kb on - strandat 1651.440 kb on + strandat 1651.441 kb on - strandat 1651.459 kb on - strandat 1651.459 kb on - strandat 1651.713 kb on + strand, within RR42_RS28040at 1651.714 kb on - strand, within RR42_RS28040at 1651.773 kb on + strand, within RR42_RS28040at 1651.852 kb on - strand, within RR42_RS28040at 1651.995 kb on + strand, within RR42_RS28040at 1652.207 kb on + strand, within RR42_RS28040at 1652.207 kb on + strand, within RR42_RS28040at 1652.207 kb on + strand, within RR42_RS28040at 1652.208 kb on - strand, within RR42_RS28040at 1652.208 kb on - strandat 1652.208 kb on - strand, within RR42_RS28040at 1652.244 kb on + strand, within RR42_RS28040at 1652.245 kb on - strand, within RR42_RS28040at 1652.508 kb on - strand, within RR42_RS28040at 1652.511 kb on + strand, within RR42_RS28040at 1652.512 kb on + strand, within RR42_RS28040at 1653.063 kb on - strand, within RR42_RS28040at 1653.884 kb on + strand, within RR42_RS28045at 1654.184 kb on + strand, within RR42_RS28045at 1654.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,650,565 - RR42_RS28035 0.32 +0.1
1,650,579 + RR42_RS28035 0.34 +0.4
1,650,580 - RR42_RS28035 0.34 +0.5
1,650,580 - RR42_RS28035 0.34 +0.5
1,650,805 - RR42_RS28035 0.57 +0.3
1,651,225 - +1.6
1,651,349 + +0.5
1,651,434 - -0.0
1,651,440 + -0.2
1,651,441 - +0.1
1,651,459 - +0.5
1,651,459 - -0.4
1,651,713 + RR42_RS28040 0.18 +0.3
1,651,714 - RR42_RS28040 0.18 -0.7
1,651,773 + RR42_RS28040 0.21 +2.3
1,651,852 - RR42_RS28040 0.24 -0.7
1,651,995 + RR42_RS28040 0.31 -0.1
1,652,207 + RR42_RS28040 0.41 +0.1
1,652,207 + RR42_RS28040 0.41 -0.3
1,652,207 + RR42_RS28040 0.41 -0.7
1,652,208 - RR42_RS28040 0.41 +0.5
1,652,208 - -0.2
1,652,208 - RR42_RS28040 0.41 +0.1
1,652,244 + RR42_RS28040 0.43 +0.9
1,652,245 - RR42_RS28040 0.43 -0.6
1,652,508 - RR42_RS28040 0.56 +0.2
1,652,511 + RR42_RS28040 0.56 +0.8
1,652,512 + RR42_RS28040 0.56 +1.6
1,653,063 - RR42_RS28040 0.82 -0.1
1,653,884 + RR42_RS28045 0.39 +0.2
1,654,184 + RR42_RS28045 0.79 -0.3
1,654,297 + +0.3

Or see this region's nucleotide sequence