Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25195 and RR42_RS25200 are separated by 558 nucleotides RR42_RS25200 and RR42_RS25205 are separated by 375 nucleotides
RR42_RS25195: RR42_RS25195 - AMP-dependent synthetase, at 993,261 to 994,934
_RS25195
RR42_RS25200: RR42_RS25200 - TetR family transcriptional regulator, at 995,493 to 996,071
_RS25200
RR42_RS25205: RR42_RS25205 - glucose 1-dehydrogenase, at 996,447 to 997,181
_RS25205
Position (kb) 995
996
997 Strain fitness (log2 ratio) -1
0
1
2 at 994.542 kb on + strand, within RR42_RS25195 at 994.542 kb on + strand, within RR42_RS25195 at 994.542 kb on + strand, within RR42_RS25195 at 994.560 kb on - strand, within RR42_RS25195 at 994.610 kb on + strand, within RR42_RS25195 at 994.611 kb on - strand, within RR42_RS25195 at 994.653 kb on + strand, within RR42_RS25195 at 994.704 kb on + strand, within RR42_RS25195 at 994.704 kb on + strand, within RR42_RS25195 at 994.705 kb on - strand, within RR42_RS25195 at 994.780 kb on + strand at 994.781 kb on - strand at 994.784 kb on + strand at 994.785 kb on - strand at 994.914 kb on - strand at 994.934 kb on + strand at 994.934 kb on + strand at 994.954 kb on + strand at 994.955 kb on - strand at 994.969 kb on - strand at 995.087 kb on - strand at 995.187 kb on + strand at 995.188 kb on - strand at 995.188 kb on - strand at 995.215 kb on - strand at 995.382 kb on - strand at 995.382 kb on - strand at 995.415 kb on + strand at 995.415 kb on + strand at 995.453 kb on + strand at 995.453 kb on + strand at 995.454 kb on - strand at 995.546 kb on + strand at 995.546 kb on + strand at 995.634 kb on + strand, within RR42_RS25200 at 995.634 kb on + strand, within RR42_RS25200 at 995.634 kb on + strand, within RR42_RS25200 at 995.635 kb on - strand, within RR42_RS25200 at 995.635 kb on - strand, within RR42_RS25200 at 995.636 kb on + strand, within RR42_RS25200 at 995.763 kb on + strand, within RR42_RS25200 at 995.764 kb on - strand, within RR42_RS25200 at 996.084 kb on + strand at 996.084 kb on + strand at 996.084 kb on + strand at 996.084 kb on + strand at 996.085 kb on - strand at 996.085 kb on - strand at 996.145 kb on + strand at 996.299 kb on + strand at 996.355 kb on - strand at 996.355 kb on - strand at 996.355 kb on - strand at 996.355 kb on - strand at 996.618 kb on + strand, within RR42_RS25205 at 996.619 kb on - strand, within RR42_RS25205 at 996.619 kb on - strand, within RR42_RS25205 at 996.709 kb on + strand, within RR42_RS25205 at 996.872 kb on + strand, within RR42_RS25205 at 996.900 kb on + strand, within RR42_RS25205 at 996.901 kb on - strand, within RR42_RS25205 at 996.901 kb on - strand, within RR42_RS25205 at 996.992 kb on + strand, within RR42_RS25205 at 996.992 kb on + strand, within RR42_RS25205 at 996.992 kb on + strand, within RR42_RS25205 at 996.992 kb on + strand, within RR42_RS25205 at 996.993 kb on - strand, within RR42_RS25205 at 996.993 kb on - strand, within RR42_RS25205 at 996.993 kb on - strand, within RR42_RS25205 at 997.026 kb on - strand, within RR42_RS25205 at 997.050 kb on + strand, within RR42_RS25205 at 997.050 kb on + strand, within RR42_RS25205
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 994,542 + RR42_RS25195 0.77 -1.1 994,542 + RR42_RS25195 0.77 +1.1 994,542 + RR42_RS25195 0.77 +0.2 994,560 - RR42_RS25195 0.78 -0.4 994,610 + RR42_RS25195 0.81 +0.1 994,611 - RR42_RS25195 0.81 +0.4 994,653 + RR42_RS25195 0.83 -0.2 994,704 + RR42_RS25195 0.86 -0.5 994,704 + RR42_RS25195 0.86 +0.3 994,705 - RR42_RS25195 0.86 +0.7 994,780 + -0.4 994,781 - +0.5 994,784 + +0.6 994,785 - -0.4 994,914 - +0.0 994,934 + +0.6 994,934 + +0.4 994,954 + -0.4 994,955 - +2.0 994,969 - +0.4 995,087 - +1.2 995,187 + -0.1 995,188 - -0.0 995,188 - -0.7 995,215 - -1.4 995,382 - -0.5 995,382 - +0.4 995,415 + +0.4 995,415 + -1.1 995,453 + +0.7 995,453 + -0.7 995,454 - +0.9 995,546 + -0.3 995,546 + -1.3 995,634 + RR42_RS25200 0.24 -0.9 995,634 + RR42_RS25200 0.24 -0.2 995,634 + RR42_RS25200 0.24 -0.5 995,635 - RR42_RS25200 0.25 -0.7 995,635 - RR42_RS25200 0.25 -0.4 995,636 + RR42_RS25200 0.25 -1.2 995,763 + RR42_RS25200 0.47 -0.4 995,764 - RR42_RS25200 0.47 -0.7 996,084 + +0.4 996,084 + +0.2 996,084 + -0.7 996,084 + +0.2 996,085 - -0.1 996,085 - -0.7 996,145 + +0.6 996,299 + -0.4 996,355 - -1.1 996,355 - -0.4 996,355 - +0.4 996,355 - -0.3 996,618 + RR42_RS25205 0.23 -1.2 996,619 - RR42_RS25205 0.23 +0.3 996,619 - RR42_RS25205 0.23 -0.6 996,709 + RR42_RS25205 0.36 +0.3 996,872 + RR42_RS25205 0.58 +0.6 996,900 + RR42_RS25205 0.62 +1.1 996,901 - RR42_RS25205 0.62 +0.1 996,901 - RR42_RS25205 0.62 -0.5 996,992 + RR42_RS25205 0.74 +1.2 996,992 + RR42_RS25205 0.74 +1.1 996,992 + RR42_RS25205 0.74 -0.5 996,992 + RR42_RS25205 0.74 +0.3 996,993 - RR42_RS25205 0.74 -0.3 996,993 - RR42_RS25205 0.74 -0.1 996,993 - RR42_RS25205 0.74 +0.5 997,026 - RR42_RS25205 0.79 -0.2 997,050 + RR42_RS25205 0.82 -0.2 997,050 + RR42_RS25205 0.82 -0.0
Or see this region's nucleotide sequence