Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24040 and RR42_RS24045 are separated by 410 nucleotides
RR42_RS24040: RR42_RS24040 - hypothetical protein, at 717,328 to 718,089
_RS24040
RR42_RS24045: RR42_RS24045 - gentisate 1,2-dioxygenase, at 718,500 to 719,561
_RS24045
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.459 kb on + strand at 716.460 kb on - strand at 716.460 kb on - strand at 716.484 kb on + strand at 716.533 kb on + strand at 716.533 kb on + strand at 716.534 kb on - strand at 716.534 kb on - strand at 716.534 kb on - strand at 716.534 kb on - strand at 716.534 kb on - strand at 716.558 kb on + strand at 716.559 kb on - strand at 716.559 kb on - strand at 716.575 kb on + strand at 716.621 kb on - strand at 716.633 kb on + strand at 716.634 kb on - strand at 716.634 kb on - strand at 716.798 kb on + strand at 716.799 kb on - strand at 716.799 kb on - strand at 716.799 kb on - strand at 716.799 kb on - strand at 716.799 kb on - strand at 716.799 kb on - strand at 716.812 kb on - strand at 716.859 kb on + strand at 716.939 kb on - strand at 716.939 kb on - strand at 716.979 kb on + strand at 716.980 kb on - strand at 717.074 kb on + strand at 717.075 kb on - strand at 717.075 kb on - strand at 717.187 kb on + strand at 717.187 kb on + strand at 717.187 kb on + strand at 717.233 kb on + strand at 717.329 kb on + strand at 717.329 kb on + strand at 717.330 kb on - strand at 717.541 kb on + strand, within RR42_RS24040 at 717.542 kb on - strand, within RR42_RS24040 at 717.554 kb on - strand, within RR42_RS24040 at 717.597 kb on + strand, within RR42_RS24040 at 717.603 kb on - strand, within RR42_RS24040 at 717.783 kb on + strand, within RR42_RS24040 at 717.784 kb on - strand, within RR42_RS24040 at 718.127 kb on - strand at 718.163 kb on + strand at 718.163 kb on + strand at 718.164 kb on - strand at 718.164 kb on - strand at 718.164 kb on - strand at 718.164 kb on - strand at 718.238 kb on + strand at 718.245 kb on + strand at 718.246 kb on - strand at 718.246 kb on - strand at 718.364 kb on + strand at 718.372 kb on + strand at 718.585 kb on + strand at 718.585 kb on + strand at 718.585 kb on + strand at 718.686 kb on - strand, within RR42_RS24045 at 718.899 kb on + strand, within RR42_RS24045 at 718.900 kb on - strand, within RR42_RS24045 at 718.900 kb on - strand, within RR42_RS24045 at 719.031 kb on + strand, within RR42_RS24045 at 719.043 kb on + strand, within RR42_RS24045 at 719.044 kb on - strand, within RR42_RS24045 at 719.089 kb on - strand, within RR42_RS24045
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 716,459 + +0.1 716,460 - +0.4 716,460 - -0.0 716,484 + -0.9 716,533 + -0.2 716,533 + -0.2 716,534 - +0.8 716,534 - +0.3 716,534 - -0.7 716,534 - -0.7 716,534 - +0.8 716,558 + -0.6 716,559 - -0.4 716,559 - +0.8 716,575 + -0.3 716,621 - +0.3 716,633 + -0.6 716,634 - -0.3 716,634 - +0.3 716,798 + -0.5 716,799 - +0.9 716,799 - -0.2 716,799 - +0.7 716,799 - +0.3 716,799 - -0.5 716,799 - +1.5 716,812 - +0.6 716,859 + +0.4 716,939 - +0.2 716,939 - -0.6 716,979 + +0.4 716,980 - -0.3 717,074 + -1.2 717,075 - -0.5 717,075 - -0.0 717,187 + +0.6 717,187 + -0.1 717,187 + +0.7 717,233 + +0.1 717,329 + +0.8 717,329 + +0.4 717,330 - +0.6 717,541 + RR42_RS24040 0.28 -1.6 717,542 - RR42_RS24040 0.28 +0.7 717,554 - RR42_RS24040 0.30 -1.5 717,597 + RR42_RS24040 0.35 -1.0 717,603 - RR42_RS24040 0.36 -0.5 717,783 + RR42_RS24040 0.60 -1.6 717,784 - RR42_RS24040 0.60 -0.3 718,127 - -1.3 718,163 + +0.1 718,163 + +0.6 718,164 - +0.5 718,164 - -0.1 718,164 - -0.3 718,164 - +0.1 718,238 + -0.9 718,245 + -0.2 718,246 - -0.6 718,246 - -1.6 718,364 + -0.0 718,372 + +0.4 718,585 + -1.0 718,585 + +1.8 718,585 + +0.2 718,686 - RR42_RS24045 0.18 -1.8 718,899 + RR42_RS24045 0.38 +2.0 718,900 - RR42_RS24045 0.38 +0.5 718,900 - RR42_RS24045 0.38 +0.1 719,031 + RR42_RS24045 0.50 -0.0 719,043 + RR42_RS24045 0.51 +0.5 719,044 - RR42_RS24045 0.51 +1.1 719,089 - RR42_RS24045 0.55 +0.2
Or see this region's nucleotide sequence