Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23165

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23160 and RR42_RS23165 are separated by 100 nucleotidesRR42_RS23165 and RR42_RS23170 are separated by 9 nucleotides RR42_RS23160: RR42_RS23160 - AMP-dependent synthetase, at 528,096 to 529,649 _RS23160 RR42_RS23165: RR42_RS23165 - LysR family transcriptional regulator, at 529,750 to 530,640 _RS23165 RR42_RS23170: RR42_RS23170 - LysR family transcriptional regulator, at 530,650 to 531,585 _RS23170 Position (kb) 529 530 531Strain fitness (log2 ratio) -1 0 1 2 3 4at 528.818 kb on - strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.994 kb on + strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 529.117 kb on + strand, within RR42_RS23160at 529.240 kb on + strand, within RR42_RS23160at 529.319 kb on - strand, within RR42_RS23160at 529.327 kb on + strand, within RR42_RS23160at 529.328 kb on - strand, within RR42_RS23160at 529.435 kb on + strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.564 kb on + strandat 529.564 kb on + strandat 529.565 kb on - strandat 529.585 kb on + strandat 529.586 kb on - strandat 529.586 kb on - strandat 529.613 kb on - strandat 529.685 kb on + strandat 529.686 kb on - strandat 529.704 kb on - strandat 529.772 kb on - strandat 529.772 kb on - strandat 530.038 kb on + strand, within RR42_RS23165at 530.343 kb on + strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.469 kb on - strand, within RR42_RS23165at 530.475 kb on - strand, within RR42_RS23165at 530.584 kb on + strandat 530.584 kb on + strandat 530.584 kb on + strandat 530.651 kb on + strandat 530.769 kb on - strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 531.068 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.533 kb on + strandat 531.621 kb on + strandat 531.622 kb on - strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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528,818 - RR42_RS23160 0.46 -0.6
528,878 + RR42_RS23160 0.50 +0.1
528,878 + RR42_RS23160 0.50 -0.2
528,878 + RR42_RS23160 0.50 -0.1
528,878 + RR42_RS23160 0.50 +0.6
528,989 - RR42_RS23160 0.57 +0.3
528,989 - RR42_RS23160 0.57 +1.2
528,994 + RR42_RS23160 0.58 -0.1
528,995 - RR42_RS23160 0.58 +0.5
528,995 - RR42_RS23160 0.58 +0.1
529,117 + RR42_RS23160 0.66 -0.9
529,240 + RR42_RS23160 0.74 -0.7
529,319 - RR42_RS23160 0.79 -0.4
529,327 + RR42_RS23160 0.79 +0.1
529,328 - RR42_RS23160 0.79 -0.4
529,435 + RR42_RS23160 0.86 +0.2
529,436 - RR42_RS23160 0.86 +0.2
529,436 - RR42_RS23160 0.86 -0.4
529,564 + -0.6
529,564 + -0.6
529,565 - -0.2
529,585 + +0.4
529,586 - +0.5
529,586 - +0.2
529,613 - -0.4
529,685 + -0.6
529,686 - -0.3
529,704 - -0.2
529,772 - +0.9
529,772 - -0.4
530,038 + RR42_RS23165 0.32 -0.0
530,343 + RR42_RS23165 0.67 +0.5
530,344 - RR42_RS23165 0.67 -0.3
530,344 - RR42_RS23165 0.67 -1.1
530,344 - RR42_RS23165 0.67 +0.0
530,344 - RR42_RS23165 0.67 +0.2
530,344 - RR42_RS23165 0.67 -0.4
530,468 + RR42_RS23165 0.81 -0.0
530,468 + RR42_RS23165 0.81 +0.9
530,468 + RR42_RS23165 0.81 -1.4
530,469 - RR42_RS23165 0.81 +0.6
530,475 - RR42_RS23165 0.81 +1.0
530,584 + -1.0
530,584 + -0.4
530,584 + -1.1
530,651 + -0.8
530,769 - RR42_RS23170 0.13 +0.1
530,837 + RR42_RS23170 0.20 -0.0
530,837 + RR42_RS23170 0.20 -0.2
530,837 + RR42_RS23170 0.20 +1.4
530,935 + RR42_RS23170 0.30 +0.1
530,935 + RR42_RS23170 0.30 +0.3
530,936 - RR42_RS23170 0.31 +0.5
530,936 - RR42_RS23170 0.31 +0.4
530,936 - RR42_RS23170 0.31 -0.5
530,936 - RR42_RS23170 0.31 -0.0
530,977 + RR42_RS23170 0.35 +1.0
530,977 + RR42_RS23170 0.35 +1.1
530,978 - RR42_RS23170 0.35 +0.1
530,978 - RR42_RS23170 0.35 -0.2
530,978 - RR42_RS23170 0.35 -0.0
531,068 + RR42_RS23170 0.45 -0.0
531,386 + RR42_RS23170 0.79 -0.3
531,386 + RR42_RS23170 0.79 -0.5
531,386 + RR42_RS23170 0.79 -0.3
531,386 + RR42_RS23170 0.79 +0.2
531,386 + RR42_RS23170 0.79 -0.7
531,386 + RR42_RS23170 0.79 +0.2
531,387 - RR42_RS23170 0.79 -0.1
531,387 - RR42_RS23170 0.79 -1.0
531,387 - RR42_RS23170 0.79 -0.2
531,387 - RR42_RS23170 0.79 +0.4
531,533 + -0.6
531,621 + +0.7
531,622 - +0.0
531,630 + +0.1
531,630 + +0.4
531,630 + -0.5
531,630 + +0.1
531,630 + +0.4
531,630 + +0.0
531,630 + -0.2
531,630 + -1.2
531,630 + +3.8
531,630 + +0.4
531,630 + +2.0
531,630 + +0.5
531,630 + +0.2
531,631 - -0.5
531,631 - +1.0
531,631 - -0.3
531,631 - -1.0
531,631 - +0.3
531,631 - -0.7
531,631 - +0.2
531,631 - +0.2
531,631 - +0.4
531,631 - +1.1
531,631 - -1.6
531,631 - -0.7
531,631 - -0.1

Or see this region's nucleotide sequence