Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22760

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22750 and RR42_RS22755 are separated by 67 nucleotidesRR42_RS22755 and RR42_RS22760 are separated by 43 nucleotidesRR42_RS22760 and RR42_RS22765 are separated by 237 nucleotides RR42_RS22750: RR42_RS22750 - aspartate racemase, at 438,050 to 438,748 _RS22750 RR42_RS22755: RR42_RS22755 - hypothetical protein, at 438,816 to 439,196 _RS22755 RR42_RS22760: RR42_RS22760 - GntR family transcriptional regulator, at 439,240 to 440,004 _RS22760 RR42_RS22765: RR42_RS22765 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 440,242 to 441,084 _RS22765 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.323 kb on + strand, within RR42_RS22750at 438.324 kb on - strand, within RR42_RS22750at 438.358 kb on + strand, within RR42_RS22750at 438.359 kb on - strand, within RR42_RS22750at 438.668 kb on - strand, within RR42_RS22750at 438.744 kb on - strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.776 kb on + strandat 438.777 kb on - strandat 438.779 kb on + strandat 438.779 kb on + strandat 438.779 kb on + strandat 438.780 kb on - strandat 438.780 kb on - strandat 438.970 kb on - strand, within RR42_RS22755at 438.970 kb on - strand, within RR42_RS22755at 438.992 kb on + strand, within RR42_RS22755at 438.992 kb on + strand, within RR42_RS22755at 438.993 kb on - strand, within RR42_RS22755at 438.993 kb on - strand, within RR42_RS22755at 439.026 kb on + strand, within RR42_RS22755at 439.036 kb on - strand, within RR42_RS22755at 439.036 kb on - strand, within RR42_RS22755at 439.053 kb on + strand, within RR42_RS22755at 439.056 kb on + strand, within RR42_RS22755at 439.056 kb on + strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.057 kb on - strand, within RR42_RS22755at 439.104 kb on + strand, within RR42_RS22755at 439.105 kb on - strand, within RR42_RS22755at 439.105 kb on - strand, within RR42_RS22755at 439.105 kb on - strand, within RR42_RS22755at 439.155 kb on + strand, within RR42_RS22755at 439.155 kb on + strand, within RR42_RS22755at 439.223 kb on + strandat 439.223 kb on + strandat 439.224 kb on - strandat 439.224 kb on - strandat 439.265 kb on - strandat 439.305 kb on + strandat 439.306 kb on - strandat 439.306 kb on - strandat 439.306 kb on - strandat 439.340 kb on + strand, within RR42_RS22760at 439.340 kb on + strand, within RR42_RS22760at 439.341 kb on - strand, within RR42_RS22760at 439.341 kb on - strand, within RR42_RS22760at 439.341 kb on - strand, within RR42_RS22760at 439.341 kb on - strand, within RR42_RS22760at 439.341 kb on - strand, within RR42_RS22760at 439.352 kb on + strand, within RR42_RS22760at 439.758 kb on + strand, within RR42_RS22760at 439.938 kb on - strandat 439.938 kb on - strandat 440.005 kb on - strandat 440.073 kb on + strandat 440.073 kb on + strandat 440.073 kb on + strandat 440.074 kb on - strandat 440.074 kb on - strandat 440.194 kb on + strandat 440.194 kb on + strandat 440.194 kb on + strandat 440.256 kb on + strandat 440.256 kb on + strandat 440.257 kb on - strandat 440.257 kb on - strandat 440.257 kb on - strandat 440.308 kb on + strandat 440.308 kb on + strandat 440.359 kb on + strand, within RR42_RS22765at 440.359 kb on + strand, within RR42_RS22765at 440.360 kb on - strand, within RR42_RS22765at 440.360 kb on - strand, within RR42_RS22765at 440.536 kb on + strand, within RR42_RS22765at 440.536 kb on + strand, within RR42_RS22765at 440.915 kb on - strand, within RR42_RS22765at 440.915 kb on - strand, within RR42_RS22765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
438,323 + RR42_RS22750 0.39 -0.5
438,323 + RR42_RS22750 0.39 +0.4
438,323 + RR42_RS22750 0.39 +0.1
438,323 + RR42_RS22750 0.39 -0.3
438,324 - RR42_RS22750 0.39 +0.2
438,358 + RR42_RS22750 0.44 +0.2
438,359 - RR42_RS22750 0.44 +1.4
438,668 - RR42_RS22750 0.88 -0.2
438,744 - +1.2
438,776 + -0.3
438,776 + -0.2
438,776 + +0.2
438,776 + -0.4
438,776 + -0.2
438,776 + +2.1
438,777 - +0.4
438,779 + -0.3
438,779 + +0.1
438,779 + -0.1
438,780 - -1.3
438,780 - +0.8
438,970 - RR42_RS22755 0.40 -3.1
438,970 - RR42_RS22755 0.40 +1.0
438,992 + RR42_RS22755 0.46 +0.3
438,992 + RR42_RS22755 0.46 -0.7
438,993 - RR42_RS22755 0.46 +0.3
438,993 - RR42_RS22755 0.46 +0.8
439,026 + RR42_RS22755 0.55 -0.0
439,036 - RR42_RS22755 0.58 +1.2
439,036 - RR42_RS22755 0.58 -0.5
439,053 + RR42_RS22755 0.62 +0.0
439,056 + RR42_RS22755 0.63 -1.3
439,056 + RR42_RS22755 0.63 -0.1
439,057 - RR42_RS22755 0.63 -0.9
439,057 - RR42_RS22755 0.63 +0.1
439,057 - RR42_RS22755 0.63 -0.0
439,057 - RR42_RS22755 0.63 -0.5
439,057 - RR42_RS22755 0.63 -0.0
439,057 - RR42_RS22755 0.63 -0.0
439,104 + RR42_RS22755 0.76 +0.1
439,105 - RR42_RS22755 0.76 +0.1
439,105 - RR42_RS22755 0.76 -0.0
439,105 - RR42_RS22755 0.76 -0.4
439,155 + RR42_RS22755 0.89 +0.3
439,155 + RR42_RS22755 0.89 +0.1
439,223 + -0.2
439,223 + -1.0
439,224 - -0.2
439,224 - -0.3
439,265 - +0.4
439,305 + -1.7
439,306 - +0.5
439,306 - -3.3
439,306 - -0.2
439,340 + RR42_RS22760 0.13 -0.7
439,340 + RR42_RS22760 0.13 -1.1
439,341 - RR42_RS22760 0.13 -2.4
439,341 - RR42_RS22760 0.13 -0.9
439,341 - RR42_RS22760 0.13 -0.2
439,341 - RR42_RS22760 0.13 -1.2
439,341 - RR42_RS22760 0.13 +0.5
439,352 + RR42_RS22760 0.15 -0.8
439,758 + RR42_RS22760 0.68 -0.7
439,938 - +0.1
439,938 - -1.0
440,005 - -0.2
440,073 + -2.4
440,073 + +0.1
440,073 + -0.7
440,074 - -1.3
440,074 - +0.2
440,194 + -0.2
440,194 + +1.5
440,194 + +1.1
440,256 + +0.1
440,256 + +1.2
440,257 - -0.1
440,257 - -0.3
440,257 - +0.5
440,308 + +0.5
440,308 + -0.8
440,359 + RR42_RS22765 0.14 +0.4
440,359 + RR42_RS22765 0.14 +0.5
440,360 - RR42_RS22765 0.14 -0.1
440,360 - RR42_RS22765 0.14 +1.1
440,536 + RR42_RS22765 0.35 +0.9
440,536 + RR42_RS22765 0.35 -0.2
440,915 - RR42_RS22765 0.80 +0.3
440,915 - RR42_RS22765 0.80 -0.3

Or see this region's nucleotide sequence