Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22580 and RR42_RS22585 are separated by 179 nucleotides RR42_RS22585 and RR42_RS22590 are separated by 185 nucleotides RR42_RS22590 and RR42_RS22595 are separated by 144 nucleotides
RR42_RS22580: RR42_RS22580 - hypothetical protein, at 401,732 to 402,106
_RS22580
RR42_RS22585: RR42_RS22585 - MarR family transcriptional regulator, at 402,286 to 402,783
_RS22585
RR42_RS22590: RR42_RS22590 - organic hydroperoxide resistance protein, at 402,969 to 403,394
_RS22590
RR42_RS22595: RR42_RS22595 - LysR family transcriptional regulator, at 403,539 to 404,465
_RS22595
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 401.972 kb on + strand, within RR42_RS22580 at 401.973 kb on - strand, within RR42_RS22580 at 402.049 kb on + strand, within RR42_RS22580 at 402.170 kb on + strand at 402.170 kb on + strand at 402.170 kb on + strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.211 kb on - strand at 402.220 kb on + strand at 402.235 kb on + strand at 402.389 kb on - strand, within RR42_RS22585 at 402.461 kb on - strand, within RR42_RS22585 at 402.767 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.864 kb on - strand at 402.866 kb on - strand at 402.878 kb on - strand at 402.946 kb on - strand at 402.953 kb on - strand at 402.990 kb on + strand at 402.990 kb on + strand at 403.059 kb on - strand, within RR42_RS22590 at 403.368 kb on - strand at 403.392 kb on + strand at 403.393 kb on - strand at 403.444 kb on + strand at 403.445 kb on - strand at 403.445 kb on - strand at 403.546 kb on - strand at 403.645 kb on - strand, within RR42_RS22595 at 403.645 kb on - strand, within RR42_RS22595 at 403.859 kb on + strand, within RR42_RS22595 at 404.211 kb on - strand, within RR42_RS22595 at 404.263 kb on + strand, within RR42_RS22595 at 404.305 kb on + strand, within RR42_RS22595
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 401,972 + RR42_RS22580 0.64 -0.8 401,973 - RR42_RS22580 0.64 +0.1 402,049 + RR42_RS22580 0.85 +0.2 402,170 + +0.2 402,170 + +0.5 402,170 + +1.1 402,171 - +0.0 402,171 - +0.7 402,171 - -0.7 402,211 - +2.1 402,220 + +0.5 402,235 + +0.5 402,389 - RR42_RS22585 0.21 -0.5 402,461 - RR42_RS22585 0.35 +1.4 402,767 + +0.4 402,781 + +0.5 402,781 + -0.9 402,781 + +0.8 402,781 + -0.8 402,864 - -0.4 402,866 - -1.7 402,878 - +0.4 402,946 - +0.8 402,953 - +0.5 402,990 + +0.1 402,990 + +0.1 403,059 - RR42_RS22590 0.21 -1.1 403,368 - +1.1 403,392 + +0.2 403,393 - -1.1 403,444 + +0.4 403,445 - -0.4 403,445 - -0.3 403,546 - +0.4 403,645 - RR42_RS22595 0.11 -0.3 403,645 - RR42_RS22595 0.11 +0.4 403,859 + RR42_RS22595 0.35 +0.3 404,211 - RR42_RS22595 0.72 +1.0 404,263 + RR42_RS22595 0.78 -1.2 404,305 + RR42_RS22595 0.83 +0.3
Or see this region's nucleotide sequence