Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20940 and RR42_RS20945 overlap by 4 nucleotides RR42_RS20945 and RR42_RS20950 are separated by 11 nucleotides
RR42_RS20940: RR42_RS20940 - tyrosine protein kinase, at 24,078 to 26,321
_RS20940
RR42_RS20945: RR42_RS20945 - protein-tyrosine phosphatase, at 26,318 to 26,782
_RS20945
RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888
_RS20950
Position (kb) 26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.682 kb on + strand, within RR42_RS20940 at 25.856 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.925 kb on - strand, within RR42_RS20940 at 25.957 kb on + strand, within RR42_RS20940 at 25.958 kb on - strand, within RR42_RS20940 at 26.324 kb on + strand at 26.419 kb on + strand, within RR42_RS20945 at 26.419 kb on + strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.638 kb on + strand, within RR42_RS20945 at 26.892 kb on - strand at 26.967 kb on - strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.110 kb on - strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.552 kb on - strand, within RR42_RS20950 at 27.687 kb on - strand, within RR42_RS20950
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 25,682 + RR42_RS20940 0.71 -1.4 25,856 + RR42_RS20940 0.79 +1.0 25,924 + RR42_RS20940 0.82 +0.2 25,924 + RR42_RS20940 0.82 -0.3 25,924 + RR42_RS20940 0.82 -1.4 25,925 - RR42_RS20940 0.82 -0.0 25,957 + RR42_RS20940 0.84 +0.4 25,958 - RR42_RS20940 0.84 +0.6 26,324 + +0.3 26,419 + RR42_RS20945 0.22 +0.5 26,419 + RR42_RS20945 0.22 +1.2 26,420 - RR42_RS20945 0.22 -1.3 26,420 - RR42_RS20945 0.22 -0.2 26,638 + RR42_RS20945 0.69 +1.9 26,892 - -0.2 26,967 - RR42_RS20950 0.16 -0.5 27,109 + RR42_RS20950 0.29 +0.2 27,109 + RR42_RS20950 0.29 -0.5 27,110 - RR42_RS20950 0.29 -0.9 27,383 + RR42_RS20950 0.54 -1.1 27,383 + RR42_RS20950 0.54 +0.5 27,384 - RR42_RS20950 0.54 -0.0 27,384 - RR42_RS20950 0.54 -0.3 27,551 + RR42_RS20950 0.69 +0.7 27,551 + RR42_RS20950 0.69 -3.0 27,552 - RR42_RS20950 0.69 -0.9 27,687 - RR42_RS20950 0.82 +0.1
Or see this region's nucleotide sequence