Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18595 and RR42_RS18600 are separated by 89 nucleotides RR42_RS18600 and RR42_RS18605 overlap by 4 nucleotides RR42_RS18605 and RR42_RS18610 are separated by 129 nucleotides RR42_RS18610 and RR42_RS18615 are separated by 59 nucleotides
RR42_RS18595: RR42_RS18595 - ABC transporter substrate-binding protein, at 4,026,350 to 4,027,672
_RS18595
RR42_RS18600: RR42_RS18600 - ABC transporter permease, at 4,027,762 to 4,028,661
_RS18600
RR42_RS18605: RR42_RS18605 - sugar ABC transporter permease, at 4,028,658 to 4,029,545
_RS18605
RR42_RS18610: RR42_RS18610 - hypothetical protein, at 4,029,675 to 4,029,899
_RS18610
RR42_RS18615: RR42_RS18615 - metal-dependent hydrolase, at 4,029,959 to 4,030,453
_RS18615
Position (kb)
4028
4029
4030 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4027.661 kb on + strand at 4027.662 kb on - strand at 4027.662 kb on - strand at 4027.662 kb on - strand at 4027.662 kb on - strand at 4027.662 kb on - strand at 4027.662 kb on - strand at 4027.850 kb on - strand at 4027.930 kb on + strand, within RR42_RS18600 at 4027.930 kb on + strand, within RR42_RS18600 at 4027.937 kb on - strand, within RR42_RS18600 at 4027.977 kb on + strand, within RR42_RS18600 at 4027.987 kb on + strand, within RR42_RS18600 at 4028.021 kb on + strand, within RR42_RS18600 at 4028.143 kb on + strand, within RR42_RS18600 at 4028.143 kb on + strand, within RR42_RS18600 at 4028.144 kb on - strand, within RR42_RS18600 at 4028.144 kb on - strand, within RR42_RS18600 at 4028.186 kb on + strand, within RR42_RS18600 at 4028.186 kb on + strand, within RR42_RS18600 at 4028.187 kb on - strand, within RR42_RS18600 at 4028.203 kb on + strand, within RR42_RS18600 at 4028.204 kb on - strand, within RR42_RS18600 at 4028.244 kb on + strand, within RR42_RS18600 at 4028.329 kb on + strand, within RR42_RS18600 at 4028.330 kb on - strand, within RR42_RS18600 at 4028.464 kb on + strand, within RR42_RS18600 at 4028.464 kb on + strand, within RR42_RS18600 at 4028.465 kb on - strand, within RR42_RS18600 at 4028.465 kb on - strand, within RR42_RS18600 at 4028.465 kb on - strand, within RR42_RS18600 at 4028.465 kb on - strand, within RR42_RS18600 at 4028.465 kb on - strand, within RR42_RS18600 at 4028.709 kb on + strand at 4028.709 kb on + strand at 4028.710 kb on - strand at 4028.710 kb on - strand at 4028.745 kb on + strand at 4028.746 kb on - strand at 4028.746 kb on - strand at 4028.790 kb on + strand, within RR42_RS18605 at 4028.791 kb on - strand, within RR42_RS18605 at 4028.930 kb on + strand, within RR42_RS18605 at 4028.991 kb on + strand, within RR42_RS18605 at 4029.348 kb on + strand, within RR42_RS18605 at 4029.348 kb on + strand, within RR42_RS18605 at 4029.429 kb on + strand, within RR42_RS18605 at 4029.489 kb on + strand at 4029.490 kb on - strand at 4029.490 kb on - strand at 4029.490 kb on - strand at 4029.508 kb on - strand at 4029.510 kb on + strand at 4029.510 kb on + strand at 4029.510 kb on + strand at 4029.510 kb on + strand at 4029.511 kb on - strand at 4029.511 kb on - strand at 4029.511 kb on - strand at 4029.511 kb on - strand at 4029.587 kb on - strand at 4029.600 kb on - strand at 4029.736 kb on + strand, within RR42_RS18610 at 4029.737 kb on - strand, within RR42_RS18610 at 4029.777 kb on + strand, within RR42_RS18610 at 4029.778 kb on - strand, within RR42_RS18610 at 4030.091 kb on + strand, within RR42_RS18615 at 4030.355 kb on + strand, within RR42_RS18615 at 4030.356 kb on - strand, within RR42_RS18615 at 4030.370 kb on + strand, within RR42_RS18615 at 4030.371 kb on - strand, within RR42_RS18615 at 4030.371 kb on - strand, within RR42_RS18615 at 4030.371 kb on - strand, within RR42_RS18615 at 4030.385 kb on + strand, within RR42_RS18615 at 4030.510 kb on + strand at 4030.510 kb on + strand at 4030.510 kb on + strand at 4030.510 kb on + strand at 4030.511 kb on - strand at 4030.511 kb on - strand at 4030.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,027,661 + -0.2 4,027,662 - +0.6 4,027,662 - +0.4 4,027,662 - -0.1 4,027,662 - -0.0 4,027,662 - -3.0 4,027,662 - -0.6 4,027,850 - +0.2 4,027,930 + RR42_RS18600 0.19 +0.3 4,027,930 + RR42_RS18600 0.19 -1.1 4,027,937 - RR42_RS18600 0.19 +0.3 4,027,977 + RR42_RS18600 0.24 +1.0 4,027,987 + RR42_RS18600 0.25 +0.5 4,028,021 + RR42_RS18600 0.29 -0.3 4,028,143 + RR42_RS18600 0.42 +0.0 4,028,143 + RR42_RS18600 0.42 +0.2 4,028,144 - RR42_RS18600 0.42 +0.3 4,028,144 - RR42_RS18600 0.42 +0.2 4,028,186 + RR42_RS18600 0.47 +0.8 4,028,186 + RR42_RS18600 0.47 +0.2 4,028,187 - RR42_RS18600 0.47 +1.3 4,028,203 + RR42_RS18600 0.49 -1.0 4,028,204 - RR42_RS18600 0.49 +1.2 4,028,244 + RR42_RS18600 0.54 -0.3 4,028,329 + RR42_RS18600 0.63 +0.1 4,028,330 - RR42_RS18600 0.63 +0.0 4,028,464 + RR42_RS18600 0.78 -0.0 4,028,464 + RR42_RS18600 0.78 -0.3 4,028,465 - RR42_RS18600 0.78 +3.2 4,028,465 - RR42_RS18600 0.78 +1.7 4,028,465 - RR42_RS18600 0.78 +0.1 4,028,465 - RR42_RS18600 0.78 +0.8 4,028,465 - RR42_RS18600 0.78 +0.7 4,028,709 + -0.0 4,028,709 + -0.1 4,028,710 - -0.6 4,028,710 - -0.3 4,028,745 + -0.3 4,028,746 - -0.9 4,028,746 - +0.8 4,028,790 + RR42_RS18605 0.15 +0.4 4,028,791 - RR42_RS18605 0.15 +0.3 4,028,930 + RR42_RS18605 0.31 +0.1 4,028,991 + RR42_RS18605 0.38 +0.7 4,029,348 + RR42_RS18605 0.78 +0.2 4,029,348 + RR42_RS18605 0.78 -0.3 4,029,429 + RR42_RS18605 0.87 +1.8 4,029,489 + -0.0 4,029,490 - +0.6 4,029,490 - -0.2 4,029,490 - -0.1 4,029,508 - +0.5 4,029,510 + +0.5 4,029,510 + +2.4 4,029,510 + -1.6 4,029,510 + +0.1 4,029,511 - +1.2 4,029,511 - -1.8 4,029,511 - +0.4 4,029,511 - +0.6 4,029,587 - +1.0 4,029,600 - -0.6 4,029,736 + RR42_RS18610 0.27 +0.9 4,029,737 - RR42_RS18610 0.28 +0.5 4,029,777 + RR42_RS18610 0.45 -1.1 4,029,778 - RR42_RS18610 0.46 +0.6 4,030,091 + RR42_RS18615 0.27 +1.2 4,030,355 + RR42_RS18615 0.80 +0.7 4,030,356 - RR42_RS18615 0.80 -0.3 4,030,370 + RR42_RS18615 0.83 -0.0 4,030,371 - RR42_RS18615 0.83 -0.4 4,030,371 - RR42_RS18615 0.83 -0.3 4,030,371 - RR42_RS18615 0.83 +0.7 4,030,385 + RR42_RS18615 0.86 +0.0 4,030,510 + -0.5 4,030,510 + -0.6 4,030,510 + +1.0 4,030,510 + +1.0 4,030,511 - +0.4 4,030,511 - -0.2 4,030,511 - +0.5
Or see this region's nucleotide sequence