Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18605

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18595 and RR42_RS18600 are separated by 89 nucleotidesRR42_RS18600 and RR42_RS18605 overlap by 4 nucleotidesRR42_RS18605 and RR42_RS18610 are separated by 129 nucleotidesRR42_RS18610 and RR42_RS18615 are separated by 59 nucleotides RR42_RS18595: RR42_RS18595 - ABC transporter substrate-binding protein, at 4,026,350 to 4,027,672 _RS18595 RR42_RS18600: RR42_RS18600 - ABC transporter permease, at 4,027,762 to 4,028,661 _RS18600 RR42_RS18605: RR42_RS18605 - sugar ABC transporter permease, at 4,028,658 to 4,029,545 _RS18605 RR42_RS18610: RR42_RS18610 - hypothetical protein, at 4,029,675 to 4,029,899 _RS18610 RR42_RS18615: RR42_RS18615 - metal-dependent hydrolase, at 4,029,959 to 4,030,453 _RS18615 Position (kb) 4028 4029 4030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4027.661 kb on + strandat 4027.662 kb on - strandat 4027.662 kb on - strandat 4027.662 kb on - strandat 4027.662 kb on - strandat 4027.662 kb on - strandat 4027.662 kb on - strandat 4027.850 kb on - strandat 4027.930 kb on + strand, within RR42_RS18600at 4027.930 kb on + strand, within RR42_RS18600at 4027.937 kb on - strand, within RR42_RS18600at 4027.977 kb on + strand, within RR42_RS18600at 4027.987 kb on + strand, within RR42_RS18600at 4028.021 kb on + strand, within RR42_RS18600at 4028.143 kb on + strand, within RR42_RS18600at 4028.143 kb on + strand, within RR42_RS18600at 4028.144 kb on - strand, within RR42_RS18600at 4028.144 kb on - strand, within RR42_RS18600at 4028.186 kb on + strand, within RR42_RS18600at 4028.186 kb on + strand, within RR42_RS18600at 4028.187 kb on - strand, within RR42_RS18600at 4028.203 kb on + strand, within RR42_RS18600at 4028.204 kb on - strand, within RR42_RS18600at 4028.244 kb on + strand, within RR42_RS18600at 4028.329 kb on + strand, within RR42_RS18600at 4028.330 kb on - strand, within RR42_RS18600at 4028.464 kb on + strand, within RR42_RS18600at 4028.464 kb on + strand, within RR42_RS18600at 4028.465 kb on - strand, within RR42_RS18600at 4028.465 kb on - strand, within RR42_RS18600at 4028.465 kb on - strand, within RR42_RS18600at 4028.465 kb on - strand, within RR42_RS18600at 4028.465 kb on - strand, within RR42_RS18600at 4028.709 kb on + strandat 4028.709 kb on + strandat 4028.710 kb on - strandat 4028.710 kb on - strandat 4028.745 kb on + strandat 4028.746 kb on - strandat 4028.746 kb on - strandat 4028.790 kb on + strand, within RR42_RS18605at 4028.791 kb on - strand, within RR42_RS18605at 4028.930 kb on + strand, within RR42_RS18605at 4028.991 kb on + strand, within RR42_RS18605at 4029.348 kb on + strand, within RR42_RS18605at 4029.348 kb on + strand, within RR42_RS18605at 4029.429 kb on + strand, within RR42_RS18605at 4029.489 kb on + strandat 4029.490 kb on - strandat 4029.490 kb on - strandat 4029.490 kb on - strandat 4029.508 kb on - strandat 4029.510 kb on + strandat 4029.510 kb on + strandat 4029.510 kb on + strandat 4029.510 kb on + strandat 4029.511 kb on - strandat 4029.511 kb on - strandat 4029.511 kb on - strandat 4029.511 kb on - strandat 4029.587 kb on - strandat 4029.600 kb on - strandat 4029.736 kb on + strand, within RR42_RS18610at 4029.737 kb on - strand, within RR42_RS18610at 4029.777 kb on + strand, within RR42_RS18610at 4029.778 kb on - strand, within RR42_RS18610at 4030.091 kb on + strand, within RR42_RS18615at 4030.355 kb on + strand, within RR42_RS18615at 4030.356 kb on - strand, within RR42_RS18615at 4030.370 kb on + strand, within RR42_RS18615at 4030.371 kb on - strand, within RR42_RS18615at 4030.371 kb on - strand, within RR42_RS18615at 4030.371 kb on - strand, within RR42_RS18615at 4030.385 kb on + strand, within RR42_RS18615at 4030.510 kb on + strandat 4030.510 kb on + strandat 4030.510 kb on + strandat 4030.510 kb on + strandat 4030.511 kb on - strandat 4030.511 kb on - strandat 4030.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,027,661 + -0.2
4,027,662 - +0.6
4,027,662 - +0.4
4,027,662 - -0.1
4,027,662 - -0.0
4,027,662 - -3.0
4,027,662 - -0.6
4,027,850 - +0.2
4,027,930 + RR42_RS18600 0.19 +0.3
4,027,930 + RR42_RS18600 0.19 -1.1
4,027,937 - RR42_RS18600 0.19 +0.3
4,027,977 + RR42_RS18600 0.24 +1.0
4,027,987 + RR42_RS18600 0.25 +0.5
4,028,021 + RR42_RS18600 0.29 -0.3
4,028,143 + RR42_RS18600 0.42 +0.0
4,028,143 + RR42_RS18600 0.42 +0.2
4,028,144 - RR42_RS18600 0.42 +0.3
4,028,144 - RR42_RS18600 0.42 +0.2
4,028,186 + RR42_RS18600 0.47 +0.8
4,028,186 + RR42_RS18600 0.47 +0.2
4,028,187 - RR42_RS18600 0.47 +1.3
4,028,203 + RR42_RS18600 0.49 -1.0
4,028,204 - RR42_RS18600 0.49 +1.2
4,028,244 + RR42_RS18600 0.54 -0.3
4,028,329 + RR42_RS18600 0.63 +0.1
4,028,330 - RR42_RS18600 0.63 +0.0
4,028,464 + RR42_RS18600 0.78 -0.0
4,028,464 + RR42_RS18600 0.78 -0.3
4,028,465 - RR42_RS18600 0.78 +3.2
4,028,465 - RR42_RS18600 0.78 +1.7
4,028,465 - RR42_RS18600 0.78 +0.1
4,028,465 - RR42_RS18600 0.78 +0.8
4,028,465 - RR42_RS18600 0.78 +0.7
4,028,709 + -0.0
4,028,709 + -0.1
4,028,710 - -0.6
4,028,710 - -0.3
4,028,745 + -0.3
4,028,746 - -0.9
4,028,746 - +0.8
4,028,790 + RR42_RS18605 0.15 +0.4
4,028,791 - RR42_RS18605 0.15 +0.3
4,028,930 + RR42_RS18605 0.31 +0.1
4,028,991 + RR42_RS18605 0.38 +0.7
4,029,348 + RR42_RS18605 0.78 +0.2
4,029,348 + RR42_RS18605 0.78 -0.3
4,029,429 + RR42_RS18605 0.87 +1.8
4,029,489 + -0.0
4,029,490 - +0.6
4,029,490 - -0.2
4,029,490 - -0.1
4,029,508 - +0.5
4,029,510 + +0.5
4,029,510 + +2.4
4,029,510 + -1.6
4,029,510 + +0.1
4,029,511 - +1.2
4,029,511 - -1.8
4,029,511 - +0.4
4,029,511 - +0.6
4,029,587 - +1.0
4,029,600 - -0.6
4,029,736 + RR42_RS18610 0.27 +0.9
4,029,737 - RR42_RS18610 0.28 +0.5
4,029,777 + RR42_RS18610 0.45 -1.1
4,029,778 - RR42_RS18610 0.46 +0.6
4,030,091 + RR42_RS18615 0.27 +1.2
4,030,355 + RR42_RS18615 0.80 +0.7
4,030,356 - RR42_RS18615 0.80 -0.3
4,030,370 + RR42_RS18615 0.83 -0.0
4,030,371 - RR42_RS18615 0.83 -0.4
4,030,371 - RR42_RS18615 0.83 -0.3
4,030,371 - RR42_RS18615 0.83 +0.7
4,030,385 + RR42_RS18615 0.86 +0.0
4,030,510 + -0.5
4,030,510 + -0.6
4,030,510 + +1.0
4,030,510 + +1.0
4,030,511 - +0.4
4,030,511 - -0.2
4,030,511 - +0.5

Or see this region's nucleotide sequence