Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16570

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16565 and RR42_RS16570 are separated by 47 nucleotidesRR42_RS16570 and RR42_RS16575 are separated by 77 nucleotides RR42_RS16565: RR42_RS16565 - hypothetical protein, at 3,589,720 to 3,590,724 _RS16565 RR42_RS16570: RR42_RS16570 - 2-nitropropane dioxygenase, at 3,590,772 to 3,591,845 _RS16570 RR42_RS16575: RR42_RS16575 - acyl-CoA dehydrogenase, at 3,591,923 to 3,593,152 _RS16575 Position (kb) 3590 3591 3592Strain fitness (log2 ratio) -1 0 1at 3590.145 kb on - strand, within RR42_RS16565at 3590.279 kb on - strand, within RR42_RS16565at 3590.279 kb on - strand, within RR42_RS16565at 3590.555 kb on - strand, within RR42_RS16565at 3590.688 kb on + strandat 3590.775 kb on + strandat 3590.786 kb on - strandat 3590.897 kb on - strand, within RR42_RS16570at 3590.897 kb on - strand, within RR42_RS16570at 3591.514 kb on + strand, within RR42_RS16570at 3591.515 kb on - strand, within RR42_RS16570at 3592.087 kb on - strand, within RR42_RS16575at 3592.412 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.492 kb on - strand, within RR42_RS16575at 3592.690 kb on - strand, within RR42_RS16575

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,590,145 - RR42_RS16565 0.42 +0.8
3,590,279 - RR42_RS16565 0.56 +0.8
3,590,279 - RR42_RS16565 0.56 +0.6
3,590,555 - RR42_RS16565 0.83 +0.1
3,590,688 + +0.3
3,590,775 + +0.9
3,590,786 - -0.3
3,590,897 - RR42_RS16570 0.12 -0.1
3,590,897 - RR42_RS16570 0.12 +1.1
3,591,514 + RR42_RS16570 0.69 +0.7
3,591,515 - RR42_RS16570 0.69 +0.3
3,592,087 - RR42_RS16575 0.13 -0.2
3,592,412 + RR42_RS16575 0.40 +0.1
3,592,491 + RR42_RS16575 0.46 +1.0
3,592,491 + RR42_RS16575 0.46 -0.6
3,592,491 + RR42_RS16575 0.46 -1.2
3,592,492 - RR42_RS16575 0.46 +1.1
3,592,690 - RR42_RS16575 0.62 +1.4

Or see this region's nucleotide sequence