Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13145

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13140 and RR42_RS13145 are separated by 50 nucleotidesRR42_RS13145 and RR42_RS13150 overlap by 8 nucleotidesRR42_RS13150 and RR42_RS13155 overlap by 4 nucleotides RR42_RS13140: RR42_RS13140 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 2,831,429 to 2,832,721 _RS13140 RR42_RS13145: RR42_RS13145 - DNA-binding protein, at 2,832,772 to 2,833,785 _RS13145 RR42_RS13150: RR42_RS13150 - pilus assembly protein PilW, at 2,833,778 to 2,834,557 _RS13150 RR42_RS13155: RR42_RS13155 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,834,554 to 2,835,708 _RS13155 Position (kb) 2832 2833 2834Strain fitness (log2 ratio) -1 0 1at 2832.728 kb on - strandat 2832.728 kb on - strandat 2832.895 kb on - strand, within RR42_RS13145at 2833.791 kb on - strandat 2833.957 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2833.990 kb on - strand, within RR42_RS13150at 2834.167 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.215 kb on - strand, within RR42_RS13150at 2834.305 kb on - strand, within RR42_RS13150at 2834.305 kb on - strand, within RR42_RS13150at 2834.326 kb on - strand, within RR42_RS13150at 2834.389 kb on - strand, within RR42_RS13150at 2834.407 kb on - strand, within RR42_RS13150

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,832,728 - +1.5
2,832,728 - +1.1
2,832,895 - RR42_RS13145 0.12 -1.0
2,833,791 - +0.8
2,833,957 - RR42_RS13150 0.23 +1.4
2,833,990 - RR42_RS13150 0.27 -1.5
2,833,990 - RR42_RS13150 0.27 +0.8
2,833,990 - RR42_RS13150 0.27 -0.2
2,834,167 - RR42_RS13150 0.50 +0.1
2,834,215 - RR42_RS13150 0.56 -0.6
2,834,215 - RR42_RS13150 0.56 -0.7
2,834,215 - RR42_RS13150 0.56 +0.3
2,834,305 - RR42_RS13150 0.68 +0.2
2,834,305 - RR42_RS13150 0.68 -0.8
2,834,326 - RR42_RS13150 0.70 +0.5
2,834,389 - RR42_RS13150 0.78 -0.7
2,834,407 - RR42_RS13150 0.81 +0.5

Or see this region's nucleotide sequence