Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08160 and RR42_RS08165 are separated by 127 nucleotides RR42_RS08165 and RR42_RS08170 overlap by 4 nucleotides RR42_RS08170 and RR42_RS08175 overlap by 4 nucleotides RR42_RS08175 and RR42_RS08180 overlap by 4 nucleotides RR42_RS08180 and RR42_RS08185 overlap by 4 nucleotides
RR42_RS08160: RR42_RS08160 - hypothetical protein, at 1,738,909 to 1,739,103
_RS08160
RR42_RS08165: RR42_RS08165 - hypothetical protein, at 1,739,231 to 1,739,686
_RS08165
RR42_RS08170: RR42_RS08170 - hypothetical protein, at 1,739,683 to 1,740,042
_RS08170
RR42_RS08175: RR42_RS08175 - hypothetical protein, at 1,740,039 to 1,740,311
_RS08175
RR42_RS08180: RR42_RS08180 - hypothetical protein, at 1,740,308 to 1,740,577
_RS08180
RR42_RS08185: RR42_RS08185 - hypothetical protein, at 1,740,574 to 1,741,428
_RS08185
Position (kb) 1740
1741 Strain fitness (log2 ratio) -1
0
1 at 1739.197 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand at 1739.484 kb on - strand, within RR42_RS08165 at 1739.484 kb on - strand, within RR42_RS08165 at 1739.484 kb on - strand, within RR42_RS08165 at 1739.628 kb on - strand, within RR42_RS08165 at 1739.771 kb on - strand, within RR42_RS08170 at 1739.792 kb on - strand, within RR42_RS08170 at 1739.886 kb on - strand, within RR42_RS08170 at 1739.886 kb on - strand, within RR42_RS08170 at 1740.067 kb on - strand, within RR42_RS08175 at 1740.322 kb on - strand at 1740.322 kb on - strand at 1740.459 kb on - strand, within RR42_RS08180 at 1740.571 kb on - strand at 1740.617 kb on - strand at 1740.695 kb on - strand, within RR42_RS08185 at 1740.695 kb on - strand, within RR42_RS08185 at 1740.800 kb on - strand, within RR42_RS08185
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,739,197 - -0.7 1,739,243 - -0.5 1,739,243 - +0.4 1,739,243 - -0.1 1,739,243 - +0.2 1,739,484 - RR42_RS08165 0.55 -1.1 1,739,484 - RR42_RS08165 0.55 -0.9 1,739,484 - RR42_RS08165 0.55 +0.1 1,739,628 - RR42_RS08165 0.87 +0.4 1,739,771 - RR42_RS08170 0.24 -1.3 1,739,792 - RR42_RS08170 0.30 -0.4 1,739,886 - RR42_RS08170 0.56 -0.5 1,739,886 - RR42_RS08170 0.56 +0.4 1,740,067 - RR42_RS08175 0.10 -1.3 1,740,322 - -1.1 1,740,322 - +0.9 1,740,459 - RR42_RS08180 0.56 -0.4 1,740,571 - +0.1 1,740,617 - -0.6 1,740,695 - RR42_RS08185 0.14 -0.1 1,740,695 - RR42_RS08185 0.14 +1.1 1,740,800 - RR42_RS08185 0.26 -1.3
Or see this region's nucleotide sequence