Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07940

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07935 and RR42_RS07940 are separated by 4 nucleotidesRR42_RS07940 and RR42_RS07945 are separated by 27 nucleotides RR42_RS07935: RR42_RS07935 - peptide ABC transporter ATPase, at 1,704,970 to 1,706,055 _RS07935 RR42_RS07940: RR42_RS07940 - ABC transporter permease, at 1,706,060 to 1,706,947 _RS07940 RR42_RS07945: RR42_RS07945 - ABC transporter permease, at 1,706,975 to 1,707,925 _RS07945 Position (kb) 1706 1707Strain fitness (log2 ratio) -1 0 1 2at 1705.269 kb on - strand, within RR42_RS07935at 1705.310 kb on + strand, within RR42_RS07935at 1705.311 kb on - strand, within RR42_RS07935at 1705.311 kb on - strand, within RR42_RS07935at 1705.373 kb on + strand, within RR42_RS07935at 1705.373 kb on + strand, within RR42_RS07935at 1705.377 kb on + strand, within RR42_RS07935at 1705.691 kb on + strand, within RR42_RS07935at 1705.692 kb on - strand, within RR42_RS07935at 1706.532 kb on + strand, within RR42_RS07940at 1706.563 kb on + strand, within RR42_RS07940at 1706.584 kb on - strand, within RR42_RS07940at 1706.721 kb on + strand, within RR42_RS07940at 1706.722 kb on - strand, within RR42_RS07940at 1707.379 kb on - strand, within RR42_RS07945at 1707.379 kb on - strand, within RR42_RS07945at 1707.386 kb on - strand, within RR42_RS07945at 1707.919 kb on - strandat 1707.919 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,705,269 - RR42_RS07935 0.28 +1.4
1,705,310 + RR42_RS07935 0.31 +0.8
1,705,311 - RR42_RS07935 0.31 +0.0
1,705,311 - RR42_RS07935 0.31 +0.3
1,705,373 + RR42_RS07935 0.37 +0.1
1,705,373 + RR42_RS07935 0.37 -0.8
1,705,377 + RR42_RS07935 0.37 -0.1
1,705,691 + RR42_RS07935 0.66 +2.2
1,705,692 - RR42_RS07935 0.66 -0.4
1,706,532 + RR42_RS07940 0.53 -1.1
1,706,563 + RR42_RS07940 0.57 -0.9
1,706,584 - RR42_RS07940 0.59 -0.6
1,706,721 + RR42_RS07940 0.74 +0.4
1,706,722 - RR42_RS07940 0.75 -1.2
1,707,379 - RR42_RS07945 0.42 +0.8
1,707,379 - RR42_RS07945 0.42 +0.5
1,707,386 - RR42_RS07945 0.43 -0.4
1,707,919 - -0.0
1,707,919 - -0.0

Or see this region's nucleotide sequence