Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07105 and RR42_RS07110 are separated by 6 nucleotides RR42_RS07110 and RR42_RS07115 are separated by 263 nucleotides RR42_RS07115 and RR42_RS07120 overlap by 1 nucleotides
RR42_RS07105: RR42_RS07105 - hypothetical protein, at 1,524,848 to 1,525,684
_RS07105
RR42_RS07110: RR42_RS07110 - hypothetical protein, at 1,525,691 to 1,525,933
_RS07110
RR42_RS07115: RR42_RS07115 - hypothetical protein, at 1,526,197 to 1,526,499
_RS07115
RR42_RS07120: RR42_RS07120 - hypothetical protein, at 1,526,499 to 1,527,764
_RS07120
Position (kb)
1526
1527 Strain fitness (log2 ratio)
-1
0
1 at 1525.197 kb on - strand, within RR42_RS07105 at 1525.214 kb on - strand, within RR42_RS07105 at 1525.457 kb on + strand, within RR42_RS07105 at 1525.457 kb on + strand, within RR42_RS07105 at 1525.458 kb on - strand, within RR42_RS07105 at 1525.493 kb on - strand, within RR42_RS07105 at 1525.493 kb on - strand, within RR42_RS07105 at 1525.493 kb on - strand, within RR42_RS07105 at 1525.507 kb on - strand, within RR42_RS07105 at 1525.594 kb on - strand, within RR42_RS07105 at 1525.682 kb on + strand at 1525.683 kb on - strand at 1525.728 kb on - strand, within RR42_RS07110 at 1525.981 kb on + strand at 1526.193 kb on - strand at 1526.347 kb on - strand, within RR42_RS07115 at 1526.523 kb on - strand at 1526.599 kb on + strand at 1526.600 kb on - strand at 1526.663 kb on + strand, within RR42_RS07120 at 1526.695 kb on + strand, within RR42_RS07120 at 1526.696 kb on - strand, within RR42_RS07120 at 1526.811 kb on + strand, within RR42_RS07120 at 1526.886 kb on - strand, within RR42_RS07120 at 1526.979 kb on - strand, within RR42_RS07120 at 1527.024 kb on + strand, within RR42_RS07120 at 1527.149 kb on + strand, within RR42_RS07120 at 1527.149 kb on + strand, within RR42_RS07120 at 1527.150 kb on - strand, within RR42_RS07120 at 1527.370 kb on + strand, within RR42_RS07120 at 1527.407 kb on + strand, within RR42_RS07120
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,525,197 - RR42_RS07105 0.42 +0.0 1,525,214 - RR42_RS07105 0.44 +0.2 1,525,457 + RR42_RS07105 0.73 -0.3 1,525,457 + RR42_RS07105 0.73 +0.9 1,525,458 - RR42_RS07105 0.73 -0.5 1,525,493 - RR42_RS07105 0.77 +0.5 1,525,493 - RR42_RS07105 0.77 -0.2 1,525,493 - RR42_RS07105 0.77 +1.0 1,525,507 - RR42_RS07105 0.79 -0.2 1,525,594 - RR42_RS07105 0.89 +1.6 1,525,682 + +0.5 1,525,683 - +0.2 1,525,728 - RR42_RS07110 0.15 -0.4 1,525,981 + -0.1 1,526,193 - +0.1 1,526,347 - RR42_RS07115 0.50 -0.7 1,526,523 - +0.4 1,526,599 + -1.1 1,526,600 - +0.7 1,526,663 + RR42_RS07120 0.13 -0.8 1,526,695 + RR42_RS07120 0.15 -0.8 1,526,696 - RR42_RS07120 0.16 +0.3 1,526,811 + RR42_RS07120 0.25 -0.3 1,526,886 - RR42_RS07120 0.31 -0.3 1,526,979 - RR42_RS07120 0.38 -0.3 1,527,024 + RR42_RS07120 0.41 -0.1 1,527,149 + RR42_RS07120 0.51 +0.2 1,527,149 + RR42_RS07120 0.51 +0.1 1,527,150 - RR42_RS07120 0.51 +0.7 1,527,370 + RR42_RS07120 0.69 -0.4 1,527,407 + RR42_RS07120 0.72 +0.6
Or see this region's nucleotide sequence