Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07115

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07105 and RR42_RS07110 are separated by 6 nucleotidesRR42_RS07110 and RR42_RS07115 are separated by 263 nucleotidesRR42_RS07115 and RR42_RS07120 overlap by 1 nucleotides RR42_RS07105: RR42_RS07105 - hypothetical protein, at 1,524,848 to 1,525,684 _RS07105 RR42_RS07110: RR42_RS07110 - hypothetical protein, at 1,525,691 to 1,525,933 _RS07110 RR42_RS07115: RR42_RS07115 - hypothetical protein, at 1,526,197 to 1,526,499 _RS07115 RR42_RS07120: RR42_RS07120 - hypothetical protein, at 1,526,499 to 1,527,764 _RS07120 Position (kb) 1526 1527Strain fitness (log2 ratio) -1 0 1at 1525.197 kb on - strand, within RR42_RS07105at 1525.214 kb on - strand, within RR42_RS07105at 1525.457 kb on + strand, within RR42_RS07105at 1525.457 kb on + strand, within RR42_RS07105at 1525.458 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.507 kb on - strand, within RR42_RS07105at 1525.594 kb on - strand, within RR42_RS07105at 1525.682 kb on + strandat 1525.683 kb on - strandat 1525.728 kb on - strand, within RR42_RS07110at 1525.981 kb on + strandat 1526.193 kb on - strandat 1526.347 kb on - strand, within RR42_RS07115at 1526.523 kb on - strandat 1526.599 kb on + strandat 1526.600 kb on - strandat 1526.663 kb on + strand, within RR42_RS07120at 1526.695 kb on + strand, within RR42_RS07120at 1526.696 kb on - strand, within RR42_RS07120at 1526.811 kb on + strand, within RR42_RS07120at 1526.886 kb on - strand, within RR42_RS07120at 1526.979 kb on - strand, within RR42_RS07120at 1527.024 kb on + strand, within RR42_RS07120at 1527.149 kb on + strand, within RR42_RS07120at 1527.149 kb on + strand, within RR42_RS07120at 1527.150 kb on - strand, within RR42_RS07120at 1527.370 kb on + strand, within RR42_RS07120at 1527.407 kb on + strand, within RR42_RS07120

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,525,197 - RR42_RS07105 0.42 +0.0
1,525,214 - RR42_RS07105 0.44 +0.2
1,525,457 + RR42_RS07105 0.73 -0.3
1,525,457 + RR42_RS07105 0.73 +0.9
1,525,458 - RR42_RS07105 0.73 -0.5
1,525,493 - RR42_RS07105 0.77 +0.5
1,525,493 - RR42_RS07105 0.77 -0.2
1,525,493 - RR42_RS07105 0.77 +1.0
1,525,507 - RR42_RS07105 0.79 -0.2
1,525,594 - RR42_RS07105 0.89 +1.6
1,525,682 + +0.5
1,525,683 - +0.2
1,525,728 - RR42_RS07110 0.15 -0.4
1,525,981 + -0.1
1,526,193 - +0.1
1,526,347 - RR42_RS07115 0.50 -0.7
1,526,523 - +0.4
1,526,599 + -1.1
1,526,600 - +0.7
1,526,663 + RR42_RS07120 0.13 -0.8
1,526,695 + RR42_RS07120 0.15 -0.8
1,526,696 - RR42_RS07120 0.16 +0.3
1,526,811 + RR42_RS07120 0.25 -0.3
1,526,886 - RR42_RS07120 0.31 -0.3
1,526,979 - RR42_RS07120 0.38 -0.3
1,527,024 + RR42_RS07120 0.41 -0.1
1,527,149 + RR42_RS07120 0.51 +0.2
1,527,149 + RR42_RS07120 0.51 +0.1
1,527,150 - RR42_RS07120 0.51 +0.7
1,527,370 + RR42_RS07120 0.69 -0.4
1,527,407 + RR42_RS07120 0.72 +0.6

Or see this region's nucleotide sequence