Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03475 and RR42_RS03480 are separated by 153 nucleotides RR42_RS03480 and RR42_RS03485 are separated by 202 nucleotides RR42_RS03485 and RR42_RS03490 are separated by 2 nucleotides
RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606
_RS03475
RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341
_RS03480
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
RR42_RS03490: RR42_RS03490 - type VI secretion protein, at 774,584 to 775,624
_RS03490
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 772.605 kb on - strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.661 kb on - strand at 772.661 kb on - strand at 773.357 kb on + strand at 773.477 kb on - strand at 773.499 kb on - strand at 773.646 kb on + strand at 773.646 kb on + strand at 773.945 kb on - strand, within RR42_RS03485 at 774.418 kb on + strand, within RR42_RS03485 at 774.419 kb on - strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.476 kb on - strand, within RR42_RS03485 at 774.755 kb on + strand, within RR42_RS03490 at 774.755 kb on + strand, within RR42_RS03490 at 774.756 kb on - strand, within RR42_RS03490 at 774.819 kb on + strand, within RR42_RS03490 at 774.820 kb on - strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 772,605 - -0.3 772,657 + +0.7 772,657 + -0.3 772,657 + -0.3 772,658 - +0.9 772,658 - +0.2 772,658 - -0.1 772,661 - -1.3 772,661 - -0.9 773,357 + -0.2 773,477 - -0.0 773,499 - +0.5 773,646 + -0.1 773,646 + +0.6 773,945 - RR42_RS03485 0.39 +0.1 774,418 + RR42_RS03485 0.84 -0.0 774,419 - RR42_RS03485 0.84 +1.0 774,475 + RR42_RS03485 0.90 +0.6 774,475 + RR42_RS03485 0.90 +0.3 774,476 - RR42_RS03485 0.90 +0.7 774,755 + RR42_RS03490 0.16 +0.1 774,755 + RR42_RS03490 0.16 +0.3 774,756 - RR42_RS03490 0.17 -1.7 774,819 + RR42_RS03490 0.23 -0.1 774,820 - RR42_RS03490 0.23 -2.1 774,978 + RR42_RS03490 0.38 -0.0 774,978 + RR42_RS03490 0.38 +0.8 774,978 + RR42_RS03490 0.38 -0.5 774,979 - RR42_RS03490 0.38 -3.1 774,979 - RR42_RS03490 0.38 +0.9 774,979 - RR42_RS03490 0.38 +0.5 774,979 - RR42_RS03490 0.38 +0.5 775,146 + RR42_RS03490 0.54 -0.1 775,146 + RR42_RS03490 0.54 +0.4 775,215 + RR42_RS03490 0.61 -0.3 775,215 + RR42_RS03490 0.61 +0.4 775,216 - RR42_RS03490 0.61 +0.5 775,216 - RR42_RS03490 0.61 +1.3 775,560 + -0.7
Or see this region's nucleotide sequence