Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01410

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01405 and RR42_RS01410 are separated by 104 nucleotidesRR42_RS01410 and RR42_RS01415 are separated by 200 nucleotidesRR42_RS01415 and RR42_RS01420 are separated by 8 nucleotides RR42_RS01405: RR42_RS01405 - lytic transglycosylase, at 316,203 to 318,155 _RS01405 RR42_RS01410: RR42_RS01410 - NAD-dependent dehydratase, at 318,260 to 319,285 _RS01410 RR42_RS01415: RR42_RS01415 - glutathione S-transferase, at 319,486 to 320,175 _RS01415 RR42_RS01420: RR42_RS01420 - 2', 3'-cyclic nucleotide 2'-phosphodiesterase, at 320,184 to 321,419 _RS01420 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2at 317.325 kb on + strand, within RR42_RS01405at 317.325 kb on + strand, within RR42_RS01405at 317.325 kb on + strand, within RR42_RS01405at 317.449 kb on - strand, within RR42_RS01405at 317.449 kb on - strand, within RR42_RS01405at 317.538 kb on + strand, within RR42_RS01405at 317.688 kb on + strand, within RR42_RS01405at 317.689 kb on - strand, within RR42_RS01405at 317.850 kb on - strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.876 kb on + strand, within RR42_RS01405at 317.876 kb on + strand, within RR42_RS01405at 317.877 kb on - strand, within RR42_RS01405at 317.926 kb on - strand, within RR42_RS01405at 318.030 kb on + strandat 318.030 kb on + strandat 318.031 kb on - strandat 318.031 kb on - strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.162 kb on - strandat 318.279 kb on + strandat 318.714 kb on - strand, within RR42_RS01410at 318.714 kb on - strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.894 kb on - strand, within RR42_RS01410at 318.894 kb on - strand, within RR42_RS01410at 318.959 kb on + strand, within RR42_RS01410at 318.983 kb on + strand, within RR42_RS01410at 318.984 kb on - strand, within RR42_RS01410at 318.984 kb on - strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410at 319.351 kb on - strandat 319.351 kb on - strandat 319.382 kb on + strandat 319.382 kb on + strandat 319.383 kb on - strandat 319.513 kb on + strandat 319.513 kb on + strandat 319.513 kb on + strandat 319.643 kb on + strand, within RR42_RS01415at 319.643 kb on + strand, within RR42_RS01415at 319.644 kb on - strand, within RR42_RS01415at 319.699 kb on + strand, within RR42_RS01415at 320.005 kb on + strand, within RR42_RS01415at 320.005 kb on + strand, within RR42_RS01415at 320.005 kb on + strand, within RR42_RS01415at 320.005 kb on + strand, within RR42_RS01415at 320.006 kb on - strand, within RR42_RS01415at 320.038 kb on + strand, within RR42_RS01415at 320.193 kb on + strandat 320.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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317,325 + RR42_RS01405 0.57 -0.5
317,325 + RR42_RS01405 0.57 +0.5
317,325 + RR42_RS01405 0.57 -0.3
317,449 - RR42_RS01405 0.64 -0.0
317,449 - RR42_RS01405 0.64 -1.3
317,538 + RR42_RS01405 0.68 +0.2
317,688 + RR42_RS01405 0.76 +0.1
317,689 - RR42_RS01405 0.76 +0.4
317,850 - RR42_RS01405 0.84 -0.3
317,868 + RR42_RS01405 0.85 -0.4
317,868 + RR42_RS01405 0.85 -0.9
317,868 + RR42_RS01405 0.85 -0.1
317,868 + RR42_RS01405 0.85 +0.6
317,868 + RR42_RS01405 0.85 -1.0
317,868 + RR42_RS01405 0.85 -0.4
317,869 - RR42_RS01405 0.85 -1.8
317,869 - RR42_RS01405 0.85 -0.5
317,869 - RR42_RS01405 0.85 -0.1
317,869 - RR42_RS01405 0.85 +0.2
317,869 - RR42_RS01405 0.85 +1.2
317,869 - RR42_RS01405 0.85 +0.0
317,869 - RR42_RS01405 0.85 +0.5
317,870 + RR42_RS01405 0.85 -0.1
317,870 + RR42_RS01405 0.85 +0.7
317,870 + RR42_RS01405 0.85 -0.4
317,870 + RR42_RS01405 0.85 +0.8
317,870 + RR42_RS01405 0.85 +0.1
317,870 + RR42_RS01405 0.85 +0.1
317,870 + RR42_RS01405 0.85 +0.3
317,870 + RR42_RS01405 0.85 -0.6
317,871 - RR42_RS01405 0.85 -0.7
317,871 - RR42_RS01405 0.85 +0.7
317,871 - RR42_RS01405 0.85 -0.6
317,876 + RR42_RS01405 0.86 -0.6
317,876 + RR42_RS01405 0.86 +2.0
317,877 - RR42_RS01405 0.86 +0.9
317,926 - RR42_RS01405 0.88 -0.1
318,030 + -0.4
318,030 + -0.6
318,031 - +0.6
318,031 - -0.2
318,060 + +0.3
318,060 + +0.3
318,060 + +1.2
318,060 + +0.1
318,060 + +0.2
318,060 + +0.5
318,060 + -0.6
318,063 + -0.6
318,063 + -1.3
318,063 + -0.3
318,063 + +0.3
318,064 - +0.5
318,064 - -0.0
318,064 - +0.0
318,064 - -0.3
318,064 - -0.2
318,162 - +1.4
318,279 + +0.5
318,714 - RR42_RS01410 0.44 +0.7
318,714 - RR42_RS01410 0.44 +1.7
318,893 + RR42_RS01410 0.62 +0.4
318,893 + RR42_RS01410 0.62 +0.4
318,893 + RR42_RS01410 0.62 +0.3
318,894 - RR42_RS01410 0.62 +0.4
318,894 - RR42_RS01410 0.62 +0.5
318,959 + RR42_RS01410 0.68 -0.6
318,983 + RR42_RS01410 0.70 +1.9
318,984 - RR42_RS01410 0.71 +0.8
318,984 - RR42_RS01410 0.71 -0.2
318,985 + RR42_RS01410 0.71 +0.2
318,985 + RR42_RS01410 0.71 +0.9
318,985 + RR42_RS01410 0.71 -0.2
318,985 + RR42_RS01410 0.71 +0.7
318,986 - RR42_RS01410 0.71 +1.5
318,986 - RR42_RS01410 0.71 +0.2
318,986 - RR42_RS01410 0.71 -1.2
319,351 - -0.3
319,351 - +0.5
319,382 + -0.3
319,382 + -0.3
319,383 - +0.5
319,513 + +1.2
319,513 + -0.3
319,513 + +0.8
319,643 + RR42_RS01415 0.23 +1.6
319,643 + RR42_RS01415 0.23 +0.7
319,644 - RR42_RS01415 0.23 -1.2
319,699 + RR42_RS01415 0.31 -0.3
320,005 + RR42_RS01415 0.75 -1.3
320,005 + RR42_RS01415 0.75 +1.2
320,005 + RR42_RS01415 0.75 +0.4
320,005 + RR42_RS01415 0.75 +0.7
320,006 - RR42_RS01415 0.75 -0.9
320,038 + RR42_RS01415 0.80 -0.9
320,193 + +0.1
320,193 + -0.1

Or see this region's nucleotide sequence