Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00875

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00870 and RR42_RS00875 are separated by 161 nucleotidesRR42_RS00875 and RR42_RS00880 overlap by 4 nucleotidesRR42_RS00880 and RR42_RS00885 are separated by 93 nucleotides RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039 _RS00870 RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045 _RS00875 RR42_RS00880: RR42_RS00880 - carbonate dehydratase, at 213,042 to 213,713 _RS00880 RR42_RS00885: RR42_RS00885 - acetyl-CoA acetyltransferase, at 213,807 to 215,003 _RS00885 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 211.155 kb on + strandat 211.184 kb on - strandat 211.240 kb on + strandat 211.381 kb on + strandat 211.381 kb on + strandat 211.426 kb on + strand, within RR42_RS00875at 211.426 kb on + strand, within RR42_RS00875at 211.427 kb on - strand, within RR42_RS00875at 211.427 kb on - strand, within RR42_RS00875at 211.441 kb on - strand, within RR42_RS00875at 211.477 kb on + strand, within RR42_RS00875at 211.478 kb on - strand, within RR42_RS00875at 211.478 kb on - strand, within RR42_RS00875at 211.564 kb on + strand, within RR42_RS00875at 211.564 kb on + strand, within RR42_RS00875at 211.565 kb on - strand, within RR42_RS00875at 211.565 kb on - strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.613 kb on - strand, within RR42_RS00875at 211.658 kb on - strand, within RR42_RS00875at 211.661 kb on - strand, within RR42_RS00875at 211.711 kb on - strand, within RR42_RS00875at 211.752 kb on + strand, within RR42_RS00875at 211.759 kb on + strand, within RR42_RS00875at 211.760 kb on - strand, within RR42_RS00875at 211.760 kb on - strand, within RR42_RS00875at 212.038 kb on + strand, within RR42_RS00875at 212.038 kb on + strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875at 212.090 kb on - strand, within RR42_RS00875at 212.090 kb on - strand, within RR42_RS00875at 212.236 kb on + strand, within RR42_RS00875at 212.236 kb on + strand, within RR42_RS00875at 212.236 kb on + strand, within RR42_RS00875at 212.237 kb on - strand, within RR42_RS00875at 212.261 kb on - strand, within RR42_RS00875at 212.261 kb on - strand, within RR42_RS00875at 212.309 kb on - strand, within RR42_RS00875at 212.447 kb on - strand, within RR42_RS00875at 212.494 kb on + strand, within RR42_RS00875at 212.494 kb on + strand, within RR42_RS00875at 212.495 kb on - strand, within RR42_RS00875at 212.495 kb on - strand, within RR42_RS00875at 212.496 kb on + strand, within RR42_RS00875at 212.496 kb on + strand, within RR42_RS00875at 212.610 kb on + strand, within RR42_RS00875at 212.632 kb on + strand, within RR42_RS00875at 212.632 kb on + strand, within RR42_RS00875at 212.632 kb on + strand, within RR42_RS00875at 212.632 kb on + strand, within RR42_RS00875at 212.632 kb on + strand, within RR42_RS00875at 212.941 kb on + strandat 212.941 kb on + strandat 212.941 kb on + strandat 212.941 kb on + strandat 213.739 kb on + strandat 213.739 kb on + strandat 213.743 kb on + strandat 213.743 kb on + strandat 213.744 kb on - strandat 213.820 kb on + strandat 213.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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211,155 + +0.9
211,184 - -2.2
211,240 + +0.0
211,381 + +0.6
211,381 + -0.2
211,426 + RR42_RS00875 0.12 +1.0
211,426 + RR42_RS00875 0.12 -0.1
211,427 - RR42_RS00875 0.12 -2.0
211,427 - RR42_RS00875 0.12 -1.3
211,441 - RR42_RS00875 0.13 -2.4
211,477 + RR42_RS00875 0.15 +1.0
211,478 - RR42_RS00875 0.15 -1.6
211,478 - RR42_RS00875 0.15 -3.6
211,564 + RR42_RS00875 0.20 +1.0
211,564 + RR42_RS00875 0.20 +0.3
211,565 - RR42_RS00875 0.20 -0.8
211,565 - RR42_RS00875 0.20 +0.4
211,612 + RR42_RS00875 0.22 -0.6
211,612 + RR42_RS00875 0.22 +1.7
211,612 + RR42_RS00875 0.22 -0.2
211,613 - RR42_RS00875 0.22 -1.9
211,658 - RR42_RS00875 0.25 -1.0
211,661 - RR42_RS00875 0.25 -2.8
211,711 - RR42_RS00875 0.28 -2.7
211,752 + RR42_RS00875 0.30 +1.2
211,759 + RR42_RS00875 0.30 +0.8
211,760 - RR42_RS00875 0.30 +0.2
211,760 - RR42_RS00875 0.30 -3.1
212,038 + RR42_RS00875 0.45 +1.1
212,038 + RR42_RS00875 0.45 +1.7
212,039 - RR42_RS00875 0.45 -0.8
212,039 - RR42_RS00875 0.45 -2.5
212,039 - RR42_RS00875 0.45 -1.8
212,090 - RR42_RS00875 0.48 -1.1
212,090 - RR42_RS00875 0.48 -1.3
212,236 + RR42_RS00875 0.56 +1.0
212,236 + RR42_RS00875 0.56 +1.0
212,236 + RR42_RS00875 0.56 +0.8
212,237 - RR42_RS00875 0.56 -0.9
212,261 - RR42_RS00875 0.57 -1.6
212,261 - RR42_RS00875 0.57 -2.2
212,309 - RR42_RS00875 0.60 -2.7
212,447 - RR42_RS00875 0.68 -2.7
212,494 + RR42_RS00875 0.70 +0.8
212,494 + RR42_RS00875 0.70 -0.8
212,495 - RR42_RS00875 0.70 -4.0
212,495 - RR42_RS00875 0.70 +0.2
212,496 + RR42_RS00875 0.70 +1.0
212,496 + RR42_RS00875 0.70 +0.2
212,610 + RR42_RS00875 0.76 +0.6
212,632 + RR42_RS00875 0.78 +1.1
212,632 + RR42_RS00875 0.78 +0.9
212,632 + RR42_RS00875 0.78 +1.3
212,632 + RR42_RS00875 0.78 +0.8
212,632 + RR42_RS00875 0.78 +1.0
212,941 + +0.2
212,941 + +1.5
212,941 + +0.5
212,941 + +1.0
213,739 + -1.8
213,739 + -1.8
213,743 + +1.2
213,743 + -1.4
213,744 - -2.2
213,820 + +0.0
213,820 + +0.4

Or see this region's nucleotide sequence