Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18080

Experiment: R2A pH5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH5
3,946,033	+		LRK54_RS18070	0.60	+1.1
3,946,033	+		LRK54_RS18070	0.60	-0.5
3,946,033	+		LRK54_RS18070	0.60	+0.7
3,946,033	+		LRK54_RS18070	0.60	+0.6
3,946,033	+		LRK54_RS18070	0.60	+0.4
3,946,033	+		LRK54_RS18070	0.60	+0.9
3,946,033	+		LRK54_RS18070	0.60	-0.0
3,946,033	+		LRK54_RS18070	0.60	-0.1
3,946,033	+		LRK54_RS18070	0.60	+0.4
3,946,033	+		LRK54_RS18070	0.60	-0.8
3,946,033	+		LRK54_RS18070	0.60	+0.2
3,946,033	+		LRK54_RS18070	0.60	-0.2
3,946,033	+		LRK54_RS18070	0.60	+0.6
3,946,033	+		LRK54_RS18070	0.60	-0.2
3,946,033	+		LRK54_RS18070	0.60	+0.4
3,946,033	+		LRK54_RS18070	0.60	-0.0
3,946,033	+		LRK54_RS18070	0.60	+0.0
3,946,033	+		LRK54_RS18070	0.60	-0.7
3,946,033	+		LRK54_RS18070	0.60	+0.0
3,946,033	+		LRK54_RS18070	0.60	+0.2
3,946,033	+		LRK54_RS18070	0.60	+3.7
3,946,033	+		LRK54_RS18070	0.60	+0.9
3,946,033	+		LRK54_RS18070	0.60	+0.2
3,946,033	+		LRK54_RS18070	0.60	-2.3
3,946,033	+		LRK54_RS18070	0.60	+0.6
3,946,033	+		LRK54_RS18070	0.60	+0.4
3,946,033	+		LRK54_RS18070	0.60	-0.3
3,946,033	+		LRK54_RS18070	0.60	-1.7
3,946,033	+		LRK54_RS18070	0.60	-0.2
3,946,034	-		LRK54_RS18070	0.60	+0.7
3,946,034	-		LRK54_RS18070	0.60	-1.0
3,946,034	-		LRK54_RS18070	0.60	+1.1
3,946,034	-		LRK54_RS18070	0.60	+1.8
3,946,034	-		LRK54_RS18070	0.60	+1.7
3,946,034	-		LRK54_RS18070	0.60	+0.8
3,946,034	-		LRK54_RS18070	0.60	+0.2
3,946,034	-		LRK54_RS18070	0.60	-1.0
3,946,034	-		LRK54_RS18070	0.60	+0.7
3,946,034	-		LRK54_RS18070	0.60	+0.5
3,946,034	-		LRK54_RS18070	0.60	-0.3
3,946,034	-		LRK54_RS18070	0.60	-0.8
3,946,034	-		LRK54_RS18070	0.60	-0.1
3,946,034	-		LRK54_RS18070	0.60	-1.1
3,946,034	-		LRK54_RS18070	0.60	+0.1
3,946,034	-		LRK54_RS18070	0.60	+0.4
3,946,034	-		LRK54_RS18070	0.60	-0.2
3,946,034	-		LRK54_RS18070	0.60	+0.7
3,946,034	-		LRK54_RS18070	0.60	+1.8
3,946,034	-		LRK54_RS18070	0.60	-1.2
3,946,034	-		LRK54_RS18070	0.60	+0.3
3,946,034	-		LRK54_RS18070	0.60	+0.2
3,946,034	-		LRK54_RS18070	0.60	+0.6
3,946,034	-		LRK54_RS18070	0.60	+0.3
3,946,034	-		LRK54_RS18070	0.60	+1.3
3,946,034	-		LRK54_RS18070	0.60	+0.2
3,946,034	-		LRK54_RS18070	0.60	+1.4
3,946,034	-		LRK54_RS18070	0.60	-0.3
3,946,034	-		LRK54_RS18070	0.60	-0.0
3,946,034	-		LRK54_RS18070	0.60	-2.1
3,946,034	-		LRK54_RS18070	0.60	+1.1
3,946,034	-		LRK54_RS18070	0.60	+0.9
3,946,099	+		LRK54_RS18070	0.65	-0.4
3,946,099	+		LRK54_RS18070	0.65	+0.1
3,946,099	+		LRK54_RS18070	0.65	+0.3
3,946,099	+		LRK54_RS18070	0.65	+0.3
3,946,099	+		LRK54_RS18070	0.65	+0.7
3,946,099	+		LRK54_RS18070	0.65	+1.1
3,946,099	+		LRK54_RS18070	0.65	+0.8
3,946,099	+		LRK54_RS18070	0.65	-1.2
3,946,099	+		LRK54_RS18070	0.65	+1.2
3,946,099	+		LRK54_RS18070	0.65	-0.7
3,946,099	+		LRK54_RS18070	0.65	+0.9
3,946,100	-		LRK54_RS18070	0.65	+0.2
3,946,100	-		LRK54_RS18070	0.65	-0.2
3,946,100	-		LRK54_RS18070	0.65	-0.5
3,946,100	-		LRK54_RS18070	0.65	+1.3
3,946,100	-		LRK54_RS18070	0.65	-1.9
3,946,100	-		LRK54_RS18070	0.65	+2.3
3,946,100	-		LRK54_RS18070	0.65	-0.1
3,946,100	-		LRK54_RS18070	0.65	-0.7
3,946,100	-		LRK54_RS18070	0.65	+0.7
3,946,100	-		LRK54_RS18070	0.65	+0.1
3,946,100	-		LRK54_RS18070	0.65	-0.3
3,946,100	-		LRK54_RS18070	0.65	-1.2
3,946,100	-		LRK54_RS18070	0.65	+0.1
3,946,100	-		LRK54_RS18070	0.65	-0.1
3,946,100	-		LRK54_RS18070	0.65	+0.7
3,946,123	+		LRK54_RS18070	0.67	-1.2
3,946,123	+		LRK54_RS18070	0.67	-0.2
3,946,123	+		LRK54_RS18070	0.67	+1.1
3,946,123	+		LRK54_RS18070	0.67	-0.3
3,946,123	+		LRK54_RS18070	0.67	+0.3
3,946,123	+		LRK54_RS18070	0.67	-0.1
3,946,123	+		LRK54_RS18070	0.67	-0.4
3,946,123	+		LRK54_RS18070	0.67	+0.2
3,946,123	+		LRK54_RS18070	0.67	+0.2
3,946,123	+		LRK54_RS18070	0.67	-0.2
3,946,123	+		LRK54_RS18070	0.67	-0.5
3,946,123	+		LRK54_RS18070	0.67	+0.5
3,946,123	+		LRK54_RS18070	0.67	-0.1
3,946,124	-		LRK54_RS18070	0.67	+0.3
3,946,124	-		LRK54_RS18070	0.67	-0.1
3,946,124	-		LRK54_RS18070	0.67	+0.3
3,946,124	-		LRK54_RS18070	0.67	+0.7
3,946,124	-		LRK54_RS18070	0.67	-0.0
3,946,124	-		LRK54_RS18070	0.67	+1.1
3,946,124	-		LRK54_RS18070	0.67	+0.4
3,946,124	-		LRK54_RS18070	0.67	+0.8
3,946,124	-		LRK54_RS18070	0.67	-0.8
3,946,124	-		LRK54_RS18070	0.67	+0.3
3,946,124	-		LRK54_RS18070	0.67	-0.7
3,946,124	-		LRK54_RS18070	0.67	+0.3
3,946,124	-		LRK54_RS18070	0.67	-1.1
3,946,124	-		LRK54_RS18070	0.67	+0.0
3,946,124	-		LRK54_RS18070	0.67	+0.6
3,946,126	+		LRK54_RS18070	0.67	+0.0
3,946,126	+		LRK54_RS18070	0.67	-0.9
3,946,126	+		LRK54_RS18070	0.67	+0.1
3,946,126	+		LRK54_RS18070	0.67	-0.7
3,946,126	+		LRK54_RS18070	0.67	-0.8
3,946,127	-		LRK54_RS18070	0.67	-0.3
3,946,127	-		LRK54_RS18070	0.67	-0.4
3,946,127	-		LRK54_RS18070	0.67	+0.9
3,946,127	-		LRK54_RS18070	0.67	+0.7
3,946,288	+		LRK54_RS18070	0.80	+0.9
3,946,288	+		LRK54_RS18070	0.80	+1.0
3,946,288	+		LRK54_RS18070	0.80	-0.1
3,946,288	+		LRK54_RS18070	0.80	-0.1
3,946,288	+		LRK54_RS18070	0.80	+0.4
3,946,288	+		LRK54_RS18070	0.80	+0.3
3,946,288	+		LRK54_RS18070	0.80	-0.2
3,946,288	+		LRK54_RS18070	0.80	-1.0
3,946,288	+		LRK54_RS18070	0.80	+1.7
3,946,288	+		LRK54_RS18070	0.80	-0.3
3,946,288	+		LRK54_RS18070	0.80	+1.1
3,946,288	+		LRK54_RS18070	0.80	+0.1
3,946,288	+		LRK54_RS18070	0.80	+0.2
3,946,288	+		LRK54_RS18070	0.80	+2.7
3,946,288	+		LRK54_RS18070	0.80	+1.1
3,946,288	+		LRK54_RS18070	0.80	+0.7
3,946,288	+		LRK54_RS18070	0.80	+0.3
3,946,288	+		LRK54_RS18070	0.80	+0.9
3,946,288	+		LRK54_RS18070	0.80	-0.6
3,946,288	+		LRK54_RS18070	0.80	-0.1
3,946,289	-		LRK54_RS18070	0.80	+0.1
3,946,289	-		LRK54_RS18070	0.80	+0.7
3,946,289	-		LRK54_RS18070	0.80	+1.0
3,946,289	-		LRK54_RS18070	0.80	-0.1
3,946,289	-		LRK54_RS18070	0.80	-0.6
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	-1.8
3,946,289	-		LRK54_RS18070	0.80	+1.0
3,946,289	-		LRK54_RS18070	0.80	-0.2
3,946,289	-		LRK54_RS18070	0.80	+0.5
3,946,289	-		LRK54_RS18070	0.80	-1.0
3,946,289	-		LRK54_RS18070	0.80	+0.7
3,946,289	-		LRK54_RS18070	0.80	-1.7
3,946,289	-		LRK54_RS18070	0.80	-0.6
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	-1.4
3,946,289	-		LRK54_RS18070	0.80	+0.7
3,946,289	-		LRK54_RS18070	0.80	+0.8
3,946,289	-		LRK54_RS18070	0.80	-0.8
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	-1.6
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	-1.2
3,946,289	-		LRK54_RS18070	0.80	-0.5
3,946,289	-		LRK54_RS18070	0.80	-0.6
3,946,289	-		LRK54_RS18070	0.80	-1.1
3,946,289	-		LRK54_RS18070	0.80	+0.8
3,946,289	-		LRK54_RS18070	0.80	+0.1
3,946,289	-		LRK54_RS18070	0.80	+0.4
3,946,289	-		LRK54_RS18070	0.80	+0.2
3,946,289	-		LRK54_RS18070	0.80	+0.1
3,946,447	+				+0.9
3,946,447	+				+0.5
3,946,448	-				-0.8
3,946,448	-				+0.3
3,946,448	-				-0.0
3,946,448	-				+0.4
3,946,448	-				+0.3
3,946,481	-				-0.7
3,946,501	+				+0.9
3,946,501	+				-0.2
3,946,501	+				+0.5
3,946,501	+				+0.1
3,946,501	+				+2.7
3,946,501	+				+0.5
3,946,501	+				-0.3
3,946,501	+				+0.2
3,946,501	+				-0.2
3,946,501	+				+0.3
3,946,501	+				+1.6
3,946,501	+				+1.1
3,946,501	+				-0.0
3,946,501	+				+0.7
3,946,501	+				+0.3
3,946,501	+				+0.8
3,946,501	+				-0.1
3,946,501	+				+0.2
3,946,501	+				+0.0
3,946,501	+				+1.0
3,946,501	+				-0.4
3,946,501	+				+0.7
3,946,502	-				-0.7
3,946,502	-				+0.1
3,946,502	-				+2.3
3,946,502	-				-0.2
3,946,502	-				+0.8
3,946,502	-				+2.7
3,946,502	-				+2.1
3,946,502	-				+1.1
3,946,502	-				-1.0
3,946,502	-				+0.1
3,946,502	-				+0.1
3,946,502	-				-0.3
3,946,502	-				+0.8
3,946,502	-				+0.3
3,946,502	-				-0.5
3,946,687	-		LRK54_RS18075	0.40	-0.4
3,946,687	-		LRK54_RS18075	0.40	-0.2
3,946,687	-		LRK54_RS18075	0.40	+1.9
3,946,687	-		LRK54_RS18075	0.40	+0.0
3,946,725	+		LRK54_RS18075	0.51	+1.3
3,946,725	+		LRK54_RS18075	0.51	-0.9
3,946,725	+		LRK54_RS18075	0.51	-0.3
3,946,725	+		LRK54_RS18075	0.51	+0.6
3,946,725	+		LRK54_RS18075	0.51	-1.0
3,946,725	+		LRK54_RS18075	0.51	+0.0
3,946,725	+		LRK54_RS18075	0.51	+2.2
3,946,725	+		LRK54_RS18075	0.51	-0.7
3,946,725	+		LRK54_RS18075	0.51	+3.3
3,946,725	+		LRK54_RS18075	0.51	+0.2
3,946,725	+		LRK54_RS18075	0.51	-1.7
3,946,725	+		LRK54_RS18075	0.51	-0.1
3,946,726	-		LRK54_RS18075	0.51	-0.3
3,946,726	-		LRK54_RS18075	0.51	-0.3
3,946,726	-		LRK54_RS18075	0.51	-0.1
3,946,726	-		LRK54_RS18075	0.51	-0.5
3,946,726	-		LRK54_RS18075	0.51	+0.7
3,946,726	-		LRK54_RS18075	0.51	-0.6
3,946,726	-		LRK54_RS18075	0.51	+1.7
3,946,726	-		LRK54_RS18075	0.51	+2.7
3,946,726	-		LRK54_RS18075	0.51	-0.5
3,946,871	-				-0.9
3,947,002	+				+2.7
3,947,011	+				-0.9
3,947,011	+				+0.9
3,947,011	+				+0.8
3,947,011	+				+1.3
3,947,011	+				+0.8
3,947,011	+				+0.6
3,947,011	+				+0.7
3,947,011	+				+0.8
3,947,012	-				-1.7
3,947,012	-				-1.3
3,947,012	-				+0.3
3,947,012	-				+0.1
3,947,012	-				-1.6
3,947,012	-				+1.3
3,947,012	-				-1.7
3,947,064	+				+0.0
3,947,064	+				+0.7
3,947,064	+				+0.4
3,947,064	+				+0.1
3,947,064	+				-0.7
3,947,065	-				+0.3
3,947,065	-				+0.0
3,947,065	-				-0.0
3,947,065	-				+0.1
3,947,097	+		LRK54_RS18080	0.12	-0.4
3,947,097	+		LRK54_RS18080	0.12	+0.3
3,947,097	+		LRK54_RS18080	0.12	-0.6
3,947,097	+		LRK54_RS18080	0.12	-1.0
3,947,097	+		LRK54_RS18080	0.12	+0.5
3,947,097	+		LRK54_RS18080	0.12	+1.1
3,947,097	+		LRK54_RS18080	0.12	+0.2
3,947,097	+		LRK54_RS18080	0.12	-0.5
3,947,097	+		LRK54_RS18080	0.12	+0.3
3,947,098	-		LRK54_RS18080	0.12	+0.7
3,947,098	-		LRK54_RS18080	0.12	+2.3
3,947,098	-		LRK54_RS18080	0.12	+0.2
3,947,098	-		LRK54_RS18080	0.12	-0.2
3,947,098	-		LRK54_RS18080	0.12	-1.5
3,947,098	-		LRK54_RS18080	0.12	+0.2
3,947,098	-		LRK54_RS18080	0.12	+0.1
3,947,098	-		LRK54_RS18080	0.12	+0.4
3,947,098	-		LRK54_RS18080	0.12	+0.3
3,947,098	-		LRK54_RS18080	0.12	+0.3
3,947,112	+		LRK54_RS18080	0.14	-0.1
3,947,112	+		LRK54_RS18080	0.14	-0.2
3,947,112	+		LRK54_RS18080	0.14	-1.4
3,947,112	+		LRK54_RS18080	0.14	+0.1
3,947,112	+		LRK54_RS18080	0.14	-0.8
3,947,112	+		LRK54_RS18080	0.14	-0.0
3,947,112	+		LRK54_RS18080	0.14	+1.1
3,947,112	+		LRK54_RS18080	0.14	+0.2
3,947,113	-		LRK54_RS18080	0.14	+0.1
3,947,113	-		LRK54_RS18080	0.14	-0.5
3,947,113	-		LRK54_RS18080	0.14	+0.6
3,947,113	-		LRK54_RS18080	0.14	-0.6
3,947,113	-		LRK54_RS18080	0.14	+0.0
3,947,113	-		LRK54_RS18080	0.14	-0.3
3,947,113	-		LRK54_RS18080	0.14	-2.2
3,947,113	-		LRK54_RS18080	0.14	+1.1
3,947,113	-		LRK54_RS18080	0.14	-1.4
3,947,113	-		LRK54_RS18080	0.14	-0.5
3,947,113	-		LRK54_RS18080	0.14	+0.1
3,947,394	+		LRK54_RS18080	0.46	-1.2
3,947,394	+		LRK54_RS18080	0.46	-1.2
3,947,394	+		LRK54_RS18080	0.46	+0.6
3,947,394	+		LRK54_RS18080	0.46	+1.5
3,947,395	-		LRK54_RS18080	0.46	+0.4
3,947,395	-		LRK54_RS18080	0.46	+0.7
3,947,395	-		LRK54_RS18080	0.46	+2.7
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