Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08365

Experiment: R2A pH5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH5
1,820,981	+		LRK54_RS08355	0.59	-1.0
1,820,981	+		LRK54_RS08355	0.59	+0.1
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	-0.7
1,820,981	+		LRK54_RS08355	0.59	+0.3
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	+0.1
1,820,981	+		LRK54_RS08355	0.59	-1.2
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	-0.8
1,820,981	+		LRK54_RS08355	0.59	-0.4
1,820,981	+		LRK54_RS08355	0.59	+1.0
1,820,981	+		LRK54_RS08355	0.59	-0.1
1,820,981	+		LRK54_RS08355	0.59	+0.9
1,820,981	+		LRK54_RS08355	0.59	+0.8
1,820,981	+		LRK54_RS08355	0.59	+0.1
1,820,981	+		LRK54_RS08355	0.59	+0.3
1,820,981	+		LRK54_RS08355	0.59	-0.6
1,820,981	+		LRK54_RS08355	0.59	+0.1
1,820,981	+		LRK54_RS08355	0.59	-0.0
1,820,981	+		LRK54_RS08355	0.59	-0.6
1,820,981	+		LRK54_RS08355	0.59	+1.0
1,820,981	+		LRK54_RS08355	0.59	-0.3
1,820,981	+		LRK54_RS08355	0.59	-0.6
1,820,982	-		LRK54_RS08355	0.59	+0.4
1,820,982	-		LRK54_RS08355	0.59	-1.1
1,820,982	-		LRK54_RS08355	0.59	+0.8
1,820,982	-		LRK54_RS08355	0.59	-2.3
1,820,982	-		LRK54_RS08355	0.59	-2.1
1,820,982	-		LRK54_RS08355	0.59	+0.2
1,820,982	-		LRK54_RS08355	0.59	+0.1
1,820,982	-		LRK54_RS08355	0.59	+1.0
1,820,982	-		LRK54_RS08355	0.59	+0.3
1,820,982	-		LRK54_RS08355	0.59	-0.7
1,820,982	-		LRK54_RS08355	0.59	-0.5
1,820,982	-		LRK54_RS08355	0.59	-0.7
1,820,982	-		LRK54_RS08355	0.59	-1.7
1,820,982	-		LRK54_RS08355	0.59	+0.6
1,820,982	-		LRK54_RS08355	0.59	-0.8
1,820,982	-		LRK54_RS08355	0.59	+0.6
1,820,982	-		LRK54_RS08355	0.59	-0.4
1,820,982	-		LRK54_RS08355	0.59	-0.7
1,820,982	-		LRK54_RS08355	0.59	+0.2
1,820,982	-		LRK54_RS08355	0.59	+0.2
1,820,982	-		LRK54_RS08355	0.59	-0.9
1,820,982	-		LRK54_RS08355	0.59	-1.4
1,820,982	-		LRK54_RS08355	0.59	+0.8
1,820,982	-		LRK54_RS08355	0.59	-0.5
1,820,982	-		LRK54_RS08355	0.59	-0.4
1,821,011	+		LRK54_RS08355	0.75	-0.3
1,821,011	+		LRK54_RS08355	0.75	-0.1
1,821,011	+		LRK54_RS08355	0.75	-0.0
1,821,011	+		LRK54_RS08355	0.75	+0.4
1,821,011	+		LRK54_RS08355	0.75	+0.3
1,821,011	+		LRK54_RS08355	0.75	-0.4
1,821,011	+		LRK54_RS08355	0.75	-0.9
1,821,011	+		LRK54_RS08355	0.75	-0.5
1,821,011	+		LRK54_RS08355	0.75	-0.2
1,821,012	-		LRK54_RS08355	0.75	+0.2
1,821,012	-		LRK54_RS08355	0.75	-0.1
1,821,012	-		LRK54_RS08355	0.75	-0.2
1,821,012	-		LRK54_RS08355	0.75	-0.3
1,821,012	-		LRK54_RS08355	0.75	+0.3
1,821,012	-		LRK54_RS08355	0.75	+1.8
1,821,012	-		LRK54_RS08355	0.75	-1.2
1,821,012	-		LRK54_RS08355	0.75	+0.0
1,821,012	-		LRK54_RS08355	0.75	+1.4
1,821,023	+		LRK54_RS08355	0.81	-0.1
1,821,023	+		LRK54_RS08355	0.81	-0.3
1,821,024	-		LRK54_RS08355	0.82	-1.0
1,821,024	-		LRK54_RS08355	0.82	-1.3
1,821,024	-		LRK54_RS08355	0.82	+0.6
1,821,046	+				-0.2
1,821,132	+		LRK54_RS08360	0.10	+0.7
1,821,159	+		LRK54_RS08360	0.15	+0.3
1,821,159	+		LRK54_RS08360	0.15	-0.4
1,821,159	+		LRK54_RS08360	0.15	-0.8
1,821,159	+		LRK54_RS08360	0.15	+0.2
1,821,159	+		LRK54_RS08360	0.15	-1.3
1,821,159	+				+2.6
1,821,159	+		LRK54_RS08360	0.15	+0.8
1,821,159	+		LRK54_RS08360	0.15	+1.3
1,821,159	+		LRK54_RS08360	0.15	-0.2
1,821,159	+		LRK54_RS08360	0.15	-1.5
1,821,159	+		LRK54_RS08360	0.15	+0.6
1,821,159	+		LRK54_RS08360	0.15	-0.1
1,821,160	-		LRK54_RS08360	0.15	-0.3
1,821,160	-		LRK54_RS08360	0.15	-1.5
1,821,160	-		LRK54_RS08360	0.15	+0.5
1,821,160	-		LRK54_RS08360	0.15	-2.1
1,821,160	-		LRK54_RS08360	0.15	-1.2
1,821,160	-		LRK54_RS08360	0.15	-2.4
1,821,160	-		LRK54_RS08360	0.15	+0.3
1,821,160	-		LRK54_RS08360	0.15	-0.3
1,821,160	-		LRK54_RS08360	0.15	-0.4
1,821,160	-		LRK54_RS08360	0.15	-1.4
1,821,261	+		LRK54_RS08360	0.32	+0.3
1,821,261	+		LRK54_RS08360	0.32	+1.6
1,821,261	+		LRK54_RS08360	0.32	+0.4
1,821,261	+		LRK54_RS08360	0.32	-1.6
1,821,261	+		LRK54_RS08360	0.32	+0.2
1,821,261	+		LRK54_RS08360	0.32	-1.4
1,821,261	+		LRK54_RS08360	0.32	-0.3
1,821,261	+		LRK54_RS08360	0.32	-0.6
1,821,261	+		LRK54_RS08360	0.32	+0.1
1,821,261	+		LRK54_RS08360	0.32	-0.1
1,821,261	+		LRK54_RS08360	0.32	+0.6
1,821,261	+		LRK54_RS08360	0.32	-0.9
1,821,261	+		LRK54_RS08360	0.32	-1.5
1,821,261	+		LRK54_RS08360	0.32	+0.8
1,821,262	-		LRK54_RS08360	0.32	+0.6
1,821,262	-		LRK54_RS08360	0.32	-1.0
1,821,262	-		LRK54_RS08360	0.32	-0.1
1,821,262	-		LRK54_RS08360	0.32	-1.0
1,821,262	-		LRK54_RS08360	0.32	-0.7
1,821,262	-		LRK54_RS08360	0.32	+0.6
1,821,262	-		LRK54_RS08360	0.32	+0.5
1,821,279	+		LRK54_RS08360	0.34	+0.3
1,821,279	+		LRK54_RS08360	0.34	-0.3
1,821,279	+		LRK54_RS08360	0.34	+0.5
1,821,280	-		LRK54_RS08360	0.35	-0.9
1,821,280	-		LRK54_RS08360	0.35	-1.8
1,821,280	-		LRK54_RS08360	0.35	-0.2
1,821,405	+		LRK54_RS08360	0.55	-0.6
1,821,405	+		LRK54_RS08360	0.55	+0.6
1,821,405	+		LRK54_RS08360	0.55	+0.2
1,821,405	+		LRK54_RS08360	0.55	-1.2
1,821,405	+		LRK54_RS08360	0.55	-0.5
1,821,405	+		LRK54_RS08360	0.55	+0.5
1,821,405	+		LRK54_RS08360	0.55	+1.0
1,821,405	+		LRK54_RS08360	0.55	+0.4
1,821,405	+		LRK54_RS08360	0.55	+0.1
1,821,405	+		LRK54_RS08360	0.55	-0.2
1,821,405	+		LRK54_RS08360	0.55	+1.5
1,821,405	+		LRK54_RS08360	0.55	+1.3
1,821,405	+		LRK54_RS08360	0.55	+0.8
1,821,405	+		LRK54_RS08360	0.55	-1.1
1,821,405	+		LRK54_RS08360	0.55	+0.7
1,821,406	-		LRK54_RS08360	0.55	-2.9
1,821,406	-		LRK54_RS08360	0.55	-1.5
1,821,406	-		LRK54_RS08360	0.55	+0.3
1,821,406	-		LRK54_RS08360	0.55	-0.3
1,821,406	-		LRK54_RS08360	0.55	-1.2
1,821,406	-		LRK54_RS08360	0.55	-0.4
1,821,406	-		LRK54_RS08360	0.55	-1.1
1,821,406	-		LRK54_RS08360	0.55	+1.1
1,821,663	+				-0.1
1,821,663	+				+0.1
1,821,663	+				-0.1
1,821,663	+				+0.2
1,821,663	+				-0.8
1,821,663	+				+0.2
1,821,663	+				-0.5
1,821,663	+				+0.0
1,821,663	+				+0.1
1,821,663	+				-2.2
1,821,663	+				+0.6
1,821,664	-				+0.8
1,821,664	-				-0.4
1,821,664	-				-0.7
1,821,664	-				+0.3
1,821,664	-				-0.6
1,821,664	-				-0.4
1,821,664	-				-0.8
1,821,664	-				+0.8
1,821,664	-				-0.2
1,821,664	-				+0.2
1,821,664	-				+0.3
1,821,664	-				-1.3
1,821,684	+				+0.3
1,821,684	+				+0.4
1,821,684	+				+0.3
1,821,684	+				-0.1
1,821,685	-				+0.1
1,821,685	-				+0.3
1,821,685	-				-0.3
1,821,685	-				+0.1
1,821,685	-				-0.9
1,821,685	-				+0.1
1,821,695	+				-0.2
1,821,695	+				-0.0
1,821,703	+				+0.4
1,821,703	+				+0.4
1,821,703	+				-0.1
1,821,703	+				-0.0
1,821,703	+				-0.1
1,821,703	+				-0.4
1,821,703	+				-0.9
1,821,703	+				+0.9
1,821,703	+				-0.5
1,821,703	+				+0.5
1,821,703	+				-0.3
1,821,703	+				+1.0
1,821,703	+				-1.1
1,821,703	+				+2.1
1,821,703	+				-0.2
1,821,703	+				+0.1
1,821,703	+				-0.1
1,821,703	+				-0.1
1,821,703	+				-0.6
1,821,703	+				+0.5
1,821,704	-				-0.5
1,821,704	-				+0.6
1,821,704	-				-1.2
1,821,704	-				-0.6
1,821,704	-				+0.9
1,821,704	-				+1.2
1,821,704	-				-0.5
1,821,704	-				-0.2
1,821,704	-				+2.3
1,821,704	-				-0.3
1,821,704	-				-0.1
1,821,704	-				-0.1
1,821,704	-				-0.7
1,821,704	-				+0.6
1,822,322	+		LRK54_RS08365	0.47	-0.5
1,822,322	+		LRK54_RS08365	0.47	+0.4
1,822,322	+		LRK54_RS08365	0.47	+1.0
1,822,322	+		LRK54_RS08365	0.47	-1.4
1,822,322	+		LRK54_RS08365	0.47	-0.3
1,822,322	+		LRK54_RS08365	0.47	-0.0
1,822,322	+		LRK54_RS08365	0.47	+0.2
1,822,322	+		LRK54_RS08365	0.47	-0.8
1,822,323	-		LRK54_RS08365	0.47	+1.1
1,822,323	-		LRK54_RS08365	0.47	-2.5
1,822,323	-		LRK54_RS08365	0.47	+0.6
1,822,323	-		LRK54_RS08365	0.47	-0.4
1,822,323	-		LRK54_RS08365	0.47	-0.6
1,822,323	-		LRK54_RS08365	0.47	-1.0
1,822,323	-		LRK54_RS08365	0.47	-0.4
1,822,323	-		LRK54_RS08365	0.47	-1.7
1,822,323	-		LRK54_RS08365	0.47	+0.6
1,822,331	+		LRK54_RS08365	0.48	-0.8
1,822,331	+		LRK54_RS08365	0.48	+0.1
1,822,331	+		LRK54_RS08365	0.48	+0.2
1,822,331	+		LRK54_RS08365	0.48	-1.1
1,822,331	+		LRK54_RS08365	0.48	-0.4
1,822,331	+		LRK54_RS08365	0.48	-1.0
1,822,331	+		LRK54_RS08365	0.48	-1.4
1,822,331	+		LRK54_RS08365	0.48	-0.0
1,822,332	-		LRK54_RS08365	0.48	-0.1
1,822,332	-		LRK54_RS08365	0.48	-1.2
1,822,332	-		LRK54_RS08365	0.48	+0.6
1,822,332	-		LRK54_RS08365	0.48	+1.0
1,822,332	-		LRK54_RS08365	0.48	+1.0
1,822,332	-		LRK54_RS08365	0.48	+0.3
1,822,332	-		LRK54_RS08365	0.48	+0.1
1,822,332	-		LRK54_RS08365	0.48	+0.9
1,822,332	-		LRK54_RS08365	0.48	-0.2
1,822,332	-		LRK54_RS08365	0.48	+0.8
1,822,332	-		LRK54_RS08365	0.48	+0.6
1,822,332	-		LRK54_RS08365	0.48	-1.4
1,822,508	+		LRK54_RS08365	0.65	-0.5
1,822,508	+		LRK54_RS08365	0.65	-0.6
1,822,508	+		LRK54_RS08365	0.65	+1.0
1,822,508	+		LRK54_RS08365	0.65	-0.8
1,822,508	+		LRK54_RS08365	0.65	+0.1
1,822,508	+		LRK54_RS08365	0.65	-0.2
1,822,508	+		LRK54_RS08365	0.65	+0.1
1,822,508	+		LRK54_RS08365	0.65	-0.6
1,822,509	-		LRK54_RS08365	0.66	+0.6
1,822,509	-		LRK54_RS08365	0.66	+0.9
1,822,509	-		LRK54_RS08365	0.66	+1.8
1,822,509	-		LRK54_RS08365	0.66	-0.8
1,822,509	-		LRK54_RS08365	0.66	+0.9
1,822,509	-		LRK54_RS08365	0.66	-1.0
1,822,509	-		LRK54_RS08365	0.66	+0.2
1,822,509	-		LRK54_RS08365	0.66	+0.6
1,822,509	-		LRK54_RS08365	0.66	-1.1
1,822,509	-		LRK54_RS08365	0.66	-0.9
1,822,625	+		LRK54_RS08365	0.77	-1.3
1,822,625	+		LRK54_RS08365	0.77	-0.0
1,822,625	+				+1.3
1,822,625	+		LRK54_RS08365	0.77	+0.8
1,822,625	+		LRK54_RS08365	0.77	+0.8
1,822,625	+		LRK54_RS08365	0.77	+0.1
1,822,625	+		LRK54_RS08365	0.77	-0.1
1,822,625	+		LRK54_RS08365	0.77	-0.4
1,822,625	+		LRK54_RS08365	0.77	+1.3
1,822,625	+		LRK54_RS08365	0.77	-0.9
1,822,625	+		LRK54_RS08365	0.77	+0.4
1,822,625	+		LRK54_RS08365	0.77	-0.6
1,822,625	+		LRK54_RS08365	0.77	-3.5
1,822,625	+		LRK54_RS08365	0.77	-0.7
1,822,625	+		LRK54_RS08365	0.77	+0.1
1,822,625	+		LRK54_RS08365	0.77	+0.6
1,822,625	+		LRK54_RS08365	0.77	-2.2
1,822,625	+		LRK54_RS08365	0.77	-0.4
1,822,625	+		LRK54_RS08365	0.77	+0.9
1,822,625	+		LRK54_RS08365	0.77	-0.9
1,822,625	+		LRK54_RS08365	0.77	+1.5
1,822,625	+		LRK54_RS08365	0.77	+1.9
1,822,625	+		LRK54_RS08365	0.77	+1.1
1,822,625	+		LRK54_RS08365	0.77	-0.1
1,822,625	+		LRK54_RS08365	0.77	-0.4
1,822,625	+		LRK54_RS08365	0.77	+1.3
1,822,625	+		LRK54_RS08365	0.77	+1.0
1,822,625	+		LRK54_RS08365	0.77	-0.0
1,822,625	+		LRK54_RS08365	0.77	-0.1
1,822,625	+		LRK54_RS08365	0.77	-0.8
1,822,625	+		LRK54_RS08365	0.77	-0.0
1,822,625	+		LRK54_RS08365	0.77	-0.4
1,822,625	+		LRK54_RS08365	0.77	-0.9
1,822,625	+		LRK54_RS08365	0.77	-2.4
1,822,625	+		LRK54_RS08365	0.77	-0.2
1,822,625	+		LRK54_RS08365	0.77	+0.6
1,822,625	+		LRK54_RS08365	0.77	+0.5
1,822,625	+		LRK54_RS08365	0.77	+0.6
1,822,625	+		LRK54_RS08365	0.77	+0.7
1,822,625	+		LRK54_RS08365	0.77	-0.0
1,822,626	-		LRK54_RS08365	0.77	-0.4
1,822,626	-		LRK54_RS08365	0.77	+1.3
1,822,626	-		LRK54_RS08365	0.77	+1.2
1,822,626	-		LRK54_RS08365	0.77	+0.5
1,822,626	-		LRK54_RS08365	0.77	-0.2
1,822,626	-		LRK54_RS08365	0.77	-1.9
1,822,626	-		LRK54_RS08365	0.77	-1.5
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