Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05660

Experiment: R2A pH5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH5
1,221,250	+				-0.0
1,221,250	+				+0.5
1,221,251	-				+0.5
1,221,259	+				-0.0
1,221,279	+				-0.0
1,221,279	+				-1.5
1,221,380	+				-0.8
1,221,380	+				+0.2
1,221,381	-		LRK54_RS05655	0.10	+0.5
1,221,381	-		LRK54_RS05655	0.10	-1.0
1,221,381	-		LRK54_RS05655	0.10	+1.5
1,221,381	-		LRK54_RS05655	0.10	-0.6
1,221,467	+		LRK54_RS05655	0.20	-1.7
1,221,468	-		LRK54_RS05655	0.21	+1.0
1,221,637	+		LRK54_RS05655	0.41	-1.3
1,221,638	-		LRK54_RS05655	0.41	-1.2
1,221,778	+		LRK54_RS05655	0.58	-0.5
1,221,779	-		LRK54_RS05655	0.58	-0.5
1,221,801	+		LRK54_RS05655	0.61	-0.3
1,221,852	-		LRK54_RS05655	0.67	-0.8
1,221,951	+		LRK54_RS05655	0.79	-0.0
1,221,951	+		LRK54_RS05655	0.79	-1.0
1,221,952	-		LRK54_RS05655	0.79	+0.5
1,221,952	-		LRK54_RS05655	0.79	-0.0
1,221,952	-		LRK54_RS05655	0.79	-0.0
1,221,952	-		LRK54_RS05655	0.79	+0.2
1,221,952	-		LRK54_RS05655	0.79	+1.0
1,221,953	+		LRK54_RS05655	0.79	-0.0
1,221,953	+		LRK54_RS05655	0.79	+0.5
1,221,954	-		LRK54_RS05655	0.80	-0.0
1,221,954	-		LRK54_RS05655	0.80	-0.6
1,221,992	-		LRK54_RS05655	0.84	-0.3
1,221,992	-		LRK54_RS05655	0.84	+0.2
1,222,051	+				-0.6
1,222,051	+				-1.0
1,222,052	-				-1.7
1,222,109	+				+0.5
1,222,132	+				-1.4
1,222,133	-				-0.3
1,222,133	-				+1.3
1,222,133	-				-0.0
1,222,133	-				-0.5
1,222,133	-				-1.0
1,222,143	+				+0.2
1,222,144	-				+0.0
1,222,157	+				-1.5
1,222,157	+				-2.1
1,222,158	-				-0.9
1,222,158	-				+0.5
1,222,188	+				-0.2
1,222,188	+				+0.2
1,222,189	-				-0.1
1,222,189	-				-0.9
1,222,189	-				+0.6
1,222,558	+		LRK54_RS05660	0.27	+1.5
1,222,558	+		LRK54_RS05660	0.27	-0.7
1,222,558	+		LRK54_RS05660	0.27	-1.2
1,222,559	-		LRK54_RS05660	0.27	-1.0
1,222,559	-		LRK54_RS05660	0.27	-1.0
1,222,559	-		LRK54_RS05660	0.27	-2.7
1,222,559	-		LRK54_RS05660	0.27	-1.9
1,222,559	-		LRK54_RS05660	0.27	-0.5
1,222,559	-		LRK54_RS05660	0.27	+0.4
1,222,559	-		LRK54_RS05660	0.27	-0.5
1,222,792	+		LRK54_RS05660	0.47	-0.5
1,222,792	+		LRK54_RS05660	0.47	+1.0
1,222,792	+		LRK54_RS05660	0.47	+2.5
1,222,792	+		LRK54_RS05660	0.47	-0.8
1,222,792	+		LRK54_RS05660	0.47	-1.3
1,222,792	+		LRK54_RS05660	0.47	-0.0
1,222,792	+		LRK54_RS05660	0.47	-0.0
1,222,792	+		LRK54_RS05660	0.47	-0.6
1,222,792	+		LRK54_RS05660	0.47	-2.0
1,222,792	+		LRK54_RS05660	0.47	-0.1
1,222,792	+		LRK54_RS05660	0.47	+1.3
1,222,792	+		LRK54_RS05660	0.47	+0.5
1,222,792	+		LRK54_RS05660	0.47	-1.2
1,222,792	+		LRK54_RS05660	0.47	+0.5
1,222,792	+		LRK54_RS05660	0.47	+2.5
1,222,792	+		LRK54_RS05660	0.47	-0.8
1,222,793	-		LRK54_RS05660	0.47	-0.6
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	-0.6
1,222,793	-		LRK54_RS05660	0.47	+0.3
1,222,793	-		LRK54_RS05660	0.47	+0.2
1,222,793	-		LRK54_RS05660	0.47	+0.0
1,222,793	-		LRK54_RS05660	0.47	-0.0
1,222,793	-		LRK54_RS05660	0.47	-0.0
1,222,793	-		LRK54_RS05660	0.47	-0.0
1,222,793	-		LRK54_RS05660	0.47	+1.0
1,222,793	-		LRK54_RS05660	0.47	-0.8
1,222,793	-		LRK54_RS05660	0.47	+0.3
1,222,793	-		LRK54_RS05660	0.47	-1.5
1,222,793	-		LRK54_RS05660	0.47	-0.7
1,222,793	-		LRK54_RS05660	0.47	+1.0
1,222,793	-		LRK54_RS05660	0.47	-1.9
1,222,793	-		LRK54_RS05660	0.47	+0.7
1,222,793	-		LRK54_RS05660	0.47	+0.1
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	-0.5
1,222,793	-		LRK54_RS05660	0.47	-0.9
1,222,793	-		LRK54_RS05660	0.47	-1.3
1,222,793	-		LRK54_RS05660	0.47	+0.1
1,222,793	-		LRK54_RS05660	0.47	+1.0
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	-1.4
1,223,025	-		LRK54_RS05660	0.67	+0.2
1,223,077	+		LRK54_RS05660	0.72	-0.5
1,223,077	+		LRK54_RS05660	0.72	-0.5
1,223,077	+		LRK54_RS05660	0.72	-0.5
1,223,078	-		LRK54_RS05660	0.72	-0.6
1,223,078	-		LRK54_RS05660	0.72	+2.0
1,223,078	-		LRK54_RS05660	0.72	+0.7
1,223,078	-		LRK54_RS05660	0.72	+0.5
1,223,078	-		LRK54_RS05660	0.72	-1.0
1,223,078	-		LRK54_RS05660	0.72	-1.0
1,223,078	-		LRK54_RS05660	0.72	-0.9
1,223,078	-		LRK54_RS05660	0.72	+0.8
1,223,078	-		LRK54_RS05660	0.72	+0.1
1,223,078	-		LRK54_RS05660	0.72	+0.1
1,223,078	-		LRK54_RS05660	0.72	+0.5
1,223,078	-		LRK54_RS05660	0.72	-0.3
1,223,078	-		LRK54_RS05660	0.72	-0.5
1,223,078	-		LRK54_RS05660	0.72	-0.4
1,223,089	+		LRK54_RS05660	0.73	+0.2
1,223,089	+		LRK54_RS05660	0.73	+0.5
1,223,089	+		LRK54_RS05660	0.73	+1.5
1,223,089	+		LRK54_RS05660	0.73	-0.6
1,223,090	-		LRK54_RS05660	0.73	+1.0
1,223,090	-		LRK54_RS05660	0.73	-2.1
1,223,090	-		LRK54_RS05660	0.73	-0.3
1,223,090	-		LRK54_RS05660	0.73	-1.4
1,223,218	+		LRK54_RS05660	0.84	-0.3
1,223,218	+		LRK54_RS05660	0.84	-0.6
1,223,218	+		LRK54_RS05660	0.84	+0.2
1,223,219	-		LRK54_RS05660	0.84	-0.5
1,223,219	-		LRK54_RS05660	0.84	+0.2
1,223,219	-		LRK54_RS05660	0.84	-1.2
1,223,219	-		LRK54_RS05660	0.84	-2.5
1,223,231	+		LRK54_RS05660	0.85	+2.1
1,223,232	-		LRK54_RS05660	0.85	-0.7
1,223,258	-		LRK54_RS05660	0.87	-1.3
1,223,290	+		LRK54_RS05660	0.90	-0.8
1,223,290	+		LRK54_RS05660	0.90	+1.0
1,223,290	+		LRK54_RS05660	0.90	+0.4
1,223,290	+		LRK54_RS05660	0.90	+1.2
1,223,290	+		LRK54_RS05660	0.90	-0.3
1,223,290	+		LRK54_RS05660	0.90	-0.2
1,223,290	+		LRK54_RS05660	0.90	-0.0
1,223,290	+		LRK54_RS05660	0.90	+3.5
1,223,290	+		LRK54_RS05660	0.90	-0.6
1,223,291	-		LRK54_RS05660	0.90	-1.9
1,223,291	-		LRK54_RS05660	0.90	-1.3
1,223,291	-		LRK54_RS05660	0.90	+2.0
1,223,291	-		LRK54_RS05660	0.90	+0.0
1,223,291	-		LRK54_RS05660	0.90	-0.5
1,223,291	-		LRK54_RS05660	0.90	-1.2
1,223,291	-		LRK54_RS05660	0.90	+1.0
1,223,291	-		LRK54_RS05660	0.90	-0.9
1,223,291	-		LRK54_RS05660	0.90	+0.3
1,223,291	-		LRK54_RS05660	0.90	-1.8
1,223,291	-		LRK54_RS05660	0.90	-1.9
1,223,291	-		LRK54_RS05660	0.90	+0.5
1,223,291	-		LRK54_RS05660	0.90	-1.3
1,223,291	-		LRK54_RS05660	0.90	-1.2
1,223,301	-				+0.5
1,223,301	-				-0.8
1,223,301	-				-0.8
1,223,301	-				+0.5
1,223,301	-				-0.2
1,223,301	-				+0.8
1,223,305	+				-0.3
1,223,305	+				+1.5
1,223,305	+				-0.5
1,223,305	+				+0.2
1,223,305	+				+0.1
1,223,305	+				-0.2
1,223,305	+				-0.0
1,223,305	+				-1.0
1,223,305	+				+2.1
1,223,305	+				-0.5
1,223,305	+				-0.5
1,223,305	+				-0.0
1,223,305	+				+3.3
1,223,305	+				+1.8
1,223,306	-				-1.9
1,223,306	-				+0.3
1,223,306	-				-1.4
1,223,306	-				-2.6
1,223,306	-				+0.5
1,223,306	-				-0.3
1,223,306	-				+0.5
1,223,306	-				-0.5
1,223,306	-				+1.0
1,223,306	-				+0.5
1,223,306	-				+0.7
1,223,306	-				-0.5
1,223,306	-				-1.9
1,223,306	-				-1.2
1,223,306	-				-0.0
1,223,306	-				-0.9
1,223,306	-				-0.8
1,223,306	-				-0.2
1,223,306	-				+0.5
1,223,306	-				+0.4
1,223,469	+				+0.2
1,223,470	-				+0.8
1,223,470	-				-1.3
1,223,470	-				+0.0
1,223,470	-				-0.3
1,223,476	+				-1.3
1,223,670	+				-0.0
1,223,670	+				+1.1
1,223,670	+				-0.6
1,223,670	+				-0.9
1,223,670	+				+0.4
1,223,670	+				+1.0
1,223,670	+				-1.3
1,223,670	+				+1.1
1,223,670	+				+0.5
1,223,670	+				-1.7
1,223,670	+				-0.7
1,223,670	+				-0.1
1,223,670	+				-2.8
1,223,670	+				-0.3
1,223,670	+				-0.3
1,223,670	+				-1.1
1,223,670	+				+1.2
1,223,670	+				+0.7
1,223,670	+				+0.8
1,223,671	-				+2.0
1,223,671	-				+0.5
1,223,671	-				-0.6
1,223,671	-				+1.5
1,223,671	-				+0.2
1,223,671	-				-1.5
1,223,809	-		LRK54_RS05665	0.12	+1.5
1,224,043	-		LRK54_RS05665	0.34	+0.5
1,224,111	+		LRK54_RS05665	0.40	-0.0
1,224,111	+		LRK54_RS05665	0.40	-0.9
1,224,111	+		LRK54_RS05665	0.40	-0.3
1,224,111	+		LRK54_RS05665	0.40	+2.5
1,224,111	+		LRK54_RS05665	0.40	+1.5
1,224,112	-		LRK54_RS05665	0.40	-0.0
1,224,112	-		LRK54_RS05665	0.40	-0.8
1,224,112	-		LRK54_RS05665	0.40	-1.0
1,224,112	-		LRK54_RS05665	0.40	+2.5
1,224,112	-		LRK54_RS05665	0.40	+0.5
1,224,112	-		LRK54_RS05665	0.40	+1.5
1,224,112	-		LRK54_RS05665	0.40	+1.3
1,224,112	-		LRK54_RS05665	0.40	+1.0
1,224,224	+		LRK54_RS05665	0.51	-0.8
1,224,224	+		LRK54_RS05665	0.51	+0.7
1,224,224	+		LRK54_RS05665	0.51	+1.0
1,224,224	+		LRK54_RS05665	0.51	-0.6
1,224,224	+		LRK54_RS05665	0.51	+0.2
1,224,225	-		LRK54_RS05665	0.51	+2.5
1,224,225	-		LRK54_RS05665	0.51	-0.3
1,224,225	-		LRK54_RS05665	0.51	-0.9
1,224,225	-		LRK54_RS05665	0.51	-0.9
1,224,229	-		LRK54_RS05665	0.51	+0.5
1,224,229	-		LRK54_RS05665	0.51	-0.5
1,224,229	-		LRK54_RS05665	0.51	-1.9
1,224,267	+		LRK54_RS05665	0.55	-2.3
1,224,268	-		LRK54_RS05665	0.55	+1.1
1,224,268	-		LRK54_RS05665	0.55	+1.2
1,224,276	+		LRK54_RS05665	0.55	+0.5
1,224,346	-		LRK54_RS05665	0.62	+0.5