Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22695 and HSERO_RS22700 are separated by 259 nucleotides HSERO_RS22700 and HSERO_RS22705 are separated by 202 nucleotides HSERO_RS22705 and HSERO_RS22710 are separated by 7 nucleotides
HSERO_RS22695: HSERO_RS22695 - GntR family transcriptional regulator, at 5,205,396 to 5,206,082
_RS22695
HSERO_RS22700: HSERO_RS22700 - methyl-accepting chemotaxis protein, at 5,206,342 to 5,208,138
_RS22700
HSERO_RS22705: HSERO_RS22705 - heme oxygenase, at 5,208,341 to 5,208,931
_RS22705
HSERO_RS22710: HSERO_RS22710 - hypothetical protein, at 5,208,939 to 5,209,379
_RS22710
Position (kb) 5206
5207
5208
5209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5205.617 kb on + strand, within HSERO_RS22695 at 5205.680 kb on - strand, within HSERO_RS22695 at 5205.835 kb on - strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5206.042 kb on - strand at 5206.073 kb on + strand at 5206.104 kb on + strand at 5206.196 kb on + strand at 5206.266 kb on + strand at 5206.318 kb on + strand at 5206.325 kb on + strand at 5206.325 kb on + strand at 5206.477 kb on - strand at 5206.550 kb on + strand, within HSERO_RS22700 at 5206.619 kb on + strand, within HSERO_RS22700 at 5206.749 kb on + strand, within HSERO_RS22700 at 5206.785 kb on + strand, within HSERO_RS22700 at 5207.067 kb on + strand, within HSERO_RS22700 at 5207.067 kb on + strand, within HSERO_RS22700 at 5207.075 kb on - strand, within HSERO_RS22700 at 5207.075 kb on - strand, within HSERO_RS22700 at 5207.520 kb on + strand, within HSERO_RS22700 at 5207.803 kb on + strand, within HSERO_RS22700 at 5207.906 kb on + strand, within HSERO_RS22700 at 5207.962 kb on + strand at 5207.967 kb on + strand at 5207.977 kb on + strand at 5208.054 kb on + strand at 5208.061 kb on - strand at 5208.112 kb on - strand at 5208.246 kb on + strand at 5208.382 kb on + strand at 5208.382 kb on + strand at 5208.390 kb on - strand at 5208.444 kb on - strand, within HSERO_RS22705 at 5208.450 kb on - strand, within HSERO_RS22705 at 5208.450 kb on - strand, within HSERO_RS22705 at 5208.450 kb on - strand, within HSERO_RS22705 at 5208.495 kb on - strand, within HSERO_RS22705 at 5208.777 kb on + strand, within HSERO_RS22705 at 5208.802 kb on - strand, within HSERO_RS22705 at 5208.854 kb on - strand, within HSERO_RS22705 at 5208.856 kb on - strand, within HSERO_RS22705 at 5208.946 kb on + strand at 5209.138 kb on + strand, within HSERO_RS22710
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 5,205,617 + HSERO_RS22695 0.32 +0.4 5,205,680 - HSERO_RS22695 0.41 -3.2 5,205,835 - HSERO_RS22695 0.64 -3.0 5,205,979 + HSERO_RS22695 0.85 -0.4 5,205,979 + HSERO_RS22695 0.85 -2.0 5,205,979 + HSERO_RS22695 0.85 -0.9 5,206,042 - +0.6 5,206,073 + -0.8 5,206,104 + +0.9 5,206,196 + -0.4 5,206,266 + -0.1 5,206,318 + +0.7 5,206,325 + -1.3 5,206,325 + -1.4 5,206,477 - +2.5 5,206,550 + HSERO_RS22700 0.12 -0.1 5,206,619 + HSERO_RS22700 0.15 +0.2 5,206,749 + HSERO_RS22700 0.23 -0.1 5,206,785 + HSERO_RS22700 0.25 -3.0 5,207,067 + HSERO_RS22700 0.40 -0.2 5,207,067 + HSERO_RS22700 0.40 -0.3 5,207,075 - HSERO_RS22700 0.41 +0.6 5,207,075 - HSERO_RS22700 0.41 -2.0 5,207,520 + HSERO_RS22700 0.66 -0.9 5,207,803 + HSERO_RS22700 0.81 +0.3 5,207,906 + HSERO_RS22700 0.87 -1.7 5,207,962 + -0.4 5,207,967 + -0.2 5,207,977 + +1.8 5,208,054 + +0.5 5,208,061 - +0.3 5,208,112 - -0.6 5,208,246 + -1.4 5,208,382 + +0.4 5,208,382 + -1.5 5,208,390 - -1.3 5,208,444 - HSERO_RS22705 0.17 -0.4 5,208,450 - HSERO_RS22705 0.18 -0.3 5,208,450 - HSERO_RS22705 0.18 -0.2 5,208,450 - HSERO_RS22705 0.18 -0.9 5,208,495 - HSERO_RS22705 0.26 +0.3 5,208,777 + HSERO_RS22705 0.74 -0.5 5,208,802 - HSERO_RS22705 0.78 -0.3 5,208,854 - HSERO_RS22705 0.87 -0.0 5,208,856 - HSERO_RS22705 0.87 -0.4 5,208,946 + +0.4 5,209,138 + HSERO_RS22710 0.45 -1.5
Or see this region's nucleotide sequence