Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20860 and HSERO_RS20865 are separated by 44 nucleotides HSERO_RS20865 and HSERO_RS20870 are separated by 143 nucleotides
HSERO_RS20860: HSERO_RS20860 - hypothetical protein, at 4,772,449 to 4,773,309
_RS20860
HSERO_RS20865: HSERO_RS20865 - ABC transporter permease, at 4,773,354 to 4,774,613
_RS20865
HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872
_RS20870
Position (kb) 4773
4774
4775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4772.463 kb on + strand at 4772.470 kb on - strand at 4772.507 kb on - strand at 4772.633 kb on + strand, within HSERO_RS20860 at 4772.641 kb on - strand, within HSERO_RS20860 at 4772.641 kb on - strand, within HSERO_RS20860 at 4772.754 kb on + strand, within HSERO_RS20860 at 4772.762 kb on - strand, within HSERO_RS20860 at 4773.007 kb on - strand, within HSERO_RS20860 at 4773.017 kb on - strand, within HSERO_RS20860 at 4773.158 kb on + strand, within HSERO_RS20860 at 4773.158 kb on + strand, within HSERO_RS20860 at 4773.209 kb on - strand, within HSERO_RS20860 at 4773.314 kb on - strand at 4773.340 kb on - strand at 4773.382 kb on + strand at 4773.414 kb on - strand at 4773.529 kb on - strand, within HSERO_RS20865 at 4773.542 kb on - strand, within HSERO_RS20865 at 4773.545 kb on + strand, within HSERO_RS20865 at 4773.688 kb on + strand, within HSERO_RS20865 at 4773.779 kb on - strand, within HSERO_RS20865 at 4773.797 kb on + strand at 4773.838 kb on + strand, within HSERO_RS20865 at 4773.846 kb on - strand, within HSERO_RS20865 at 4773.874 kb on + strand, within HSERO_RS20865 at 4774.097 kb on + strand, within HSERO_RS20865 at 4774.225 kb on - strand, within HSERO_RS20865 at 4774.309 kb on - strand, within HSERO_RS20865 at 4774.786 kb on - strand at 4774.796 kb on - strand at 4774.811 kb on + strand at 4774.876 kb on - strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.071 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.210 kb on + strand, within HSERO_RS20870 at 4775.228 kb on + strand, within HSERO_RS20870 at 4775.251 kb on - strand, within HSERO_RS20870 at 4775.294 kb on - strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.433 kb on - strand, within HSERO_RS20870 at 4775.539 kb on + strand, within HSERO_RS20870
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 4,772,463 + -0.0 4,772,470 - -0.3 4,772,507 - -0.3 4,772,633 + HSERO_RS20860 0.21 +0.3 4,772,641 - HSERO_RS20860 0.22 +1.3 4,772,641 - HSERO_RS20860 0.22 +1.0 4,772,754 + HSERO_RS20860 0.35 -1.7 4,772,762 - HSERO_RS20860 0.36 -1.4 4,773,007 - HSERO_RS20860 0.65 +0.5 4,773,017 - HSERO_RS20860 0.66 +0.0 4,773,158 + HSERO_RS20860 0.82 +1.3 4,773,158 + HSERO_RS20860 0.82 -0.8 4,773,209 - HSERO_RS20860 0.88 +2.6 4,773,314 - -0.9 4,773,340 - -0.7 4,773,382 + +1.0 4,773,414 - -2.4 4,773,529 - HSERO_RS20865 0.14 -2.4 4,773,542 - HSERO_RS20865 0.15 -1.5 4,773,545 + HSERO_RS20865 0.15 -1.7 4,773,688 + HSERO_RS20865 0.27 +0.2 4,773,779 - HSERO_RS20865 0.34 -0.7 4,773,797 + +2.6 4,773,838 + HSERO_RS20865 0.38 -0.2 4,773,846 - HSERO_RS20865 0.39 -0.5 4,773,874 + HSERO_RS20865 0.41 +0.1 4,774,097 + HSERO_RS20865 0.59 -0.4 4,774,225 - HSERO_RS20865 0.69 +0.4 4,774,309 - HSERO_RS20865 0.76 -1.3 4,774,786 - +0.6 4,774,796 - -1.1 4,774,811 + -2.1 4,774,876 - HSERO_RS20870 0.11 -0.7 4,775,016 + HSERO_RS20870 0.23 +0.3 4,775,016 + HSERO_RS20870 0.23 -0.4 4,775,071 + HSERO_RS20870 0.28 -0.0 4,775,161 + HSERO_RS20870 0.36 -2.5 4,775,161 + HSERO_RS20870 0.36 +1.1 4,775,210 + HSERO_RS20870 0.41 +0.4 4,775,228 + HSERO_RS20870 0.42 -0.4 4,775,251 - HSERO_RS20870 0.44 -2.5 4,775,294 - HSERO_RS20870 0.48 +0.3 4,775,301 + HSERO_RS20870 0.49 -1.2 4,775,301 + HSERO_RS20870 0.49 -0.5 4,775,433 - HSERO_RS20870 0.61 -1.2 4,775,539 + HSERO_RS20870 0.70 +0.3
Or see this region's nucleotide sequence