Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17015

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17005 and HSERO_RS17010 overlap by 13 nucleotidesHSERO_RS17010 and HSERO_RS17015 are separated by 9 nucleotidesHSERO_RS17015 and HSERO_RS17020 are separated by 2 nucleotides HSERO_RS17005: HSERO_RS17005 - ABC transporter for D-sorbitol/xylitol, permease component 1 (from data), at 3,892,648 to 3,893,526 _RS17005 HSERO_RS17010: HSERO_RS17010 - ABC transporter for D-sorbitol/xylitol, permease component 2 (from data), at 3,893,514 to 3,894,326 _RS17010 HSERO_RS17015: HSERO_RS17015 - sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) (from data), at 3,894,336 to 3,895,373 _RS17015 HSERO_RS17020: HSERO_RS17020 - ABC transporter for D-sorbitol/xylitol, ATPase component (from data), at 3,895,376 to 3,896,596 _RS17020 Position (kb) 3894 3895 3896Strain fitness (log2 ratio) -2 -1 0 1 2at 3893.410 kb on + strand, within HSERO_RS17005at 3893.419 kb on - strand, within HSERO_RS17005at 3893.440 kb on + strandat 3893.479 kb on - strandat 3893.596 kb on - strand, within HSERO_RS17010at 3893.685 kb on + strand, within HSERO_RS17010at 3893.761 kb on - strand, within HSERO_RS17010at 3893.762 kb on + strand, within HSERO_RS17010at 3893.899 kb on + strand, within HSERO_RS17010at 3894.024 kb on + strand, within HSERO_RS17010at 3894.145 kb on + strand, within HSERO_RS17010at 3894.145 kb on + strand, within HSERO_RS17010at 3894.159 kb on + strand, within HSERO_RS17010at 3894.175 kb on - strand, within HSERO_RS17010at 3894.307 kb on - strandat 3894.345 kb on + strandat 3894.421 kb on - strandat 3894.459 kb on + strand, within HSERO_RS17015at 3894.472 kb on - strand, within HSERO_RS17015at 3894.491 kb on + strand, within HSERO_RS17015at 3894.513 kb on + strand, within HSERO_RS17015at 3894.580 kb on + strand, within HSERO_RS17015at 3894.681 kb on + strand, within HSERO_RS17015at 3894.681 kb on + strand, within HSERO_RS17015at 3894.863 kb on - strand, within HSERO_RS17015at 3895.180 kb on - strand, within HSERO_RS17015at 3895.251 kb on - strand, within HSERO_RS17015at 3895.392 kb on + strandat 3895.411 kb on - strandat 3895.440 kb on + strandat 3895.710 kb on + strand, within HSERO_RS17020at 3895.816 kb on + strand, within HSERO_RS17020at 3895.872 kb on + strand, within HSERO_RS17020at 3895.950 kb on + strand, within HSERO_RS17020at 3896.046 kb on - strand, within HSERO_RS17020at 3896.137 kb on - strand, within HSERO_RS17020at 3896.140 kb on + strand, within HSERO_RS17020at 3896.261 kb on + strand, within HSERO_RS17020at 3896.265 kb on + strand, within HSERO_RS17020at 3896.270 kb on + strand, within HSERO_RS17020at 3896.297 kb on - strand, within HSERO_RS17020at 3896.308 kb on + strand, within HSERO_RS17020

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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3,893,410 + HSERO_RS17005 0.87 +0.6
3,893,419 - HSERO_RS17005 0.88 -1.7
3,893,440 + +0.4
3,893,479 - -0.3
3,893,596 - HSERO_RS17010 0.10 -0.8
3,893,685 + HSERO_RS17010 0.21 -2.4
3,893,761 - HSERO_RS17010 0.30 +0.2
3,893,762 + HSERO_RS17010 0.31 +0.2
3,893,899 + HSERO_RS17010 0.47 -0.2
3,894,024 + HSERO_RS17010 0.63 -1.6
3,894,145 + HSERO_RS17010 0.78 -1.0
3,894,145 + HSERO_RS17010 0.78 +0.0
3,894,159 + HSERO_RS17010 0.79 -1.8
3,894,175 - HSERO_RS17010 0.81 -1.5
3,894,307 - +0.6
3,894,345 + -0.3
3,894,421 - +0.3
3,894,459 + HSERO_RS17015 0.12 +0.1
3,894,472 - HSERO_RS17015 0.13 -0.1
3,894,491 + HSERO_RS17015 0.15 -0.3
3,894,513 + HSERO_RS17015 0.17 +0.4
3,894,580 + HSERO_RS17015 0.24 +2.2
3,894,681 + HSERO_RS17015 0.33 +2.0
3,894,681 + HSERO_RS17015 0.33 -0.1
3,894,863 - HSERO_RS17015 0.51 +0.7
3,895,180 - HSERO_RS17015 0.81 +0.8
3,895,251 - HSERO_RS17015 0.88 -1.9
3,895,392 + -0.5
3,895,411 - -0.5
3,895,440 + -0.4
3,895,710 + HSERO_RS17020 0.27 -0.0
3,895,816 + HSERO_RS17020 0.36 -0.3
3,895,872 + HSERO_RS17020 0.41 +0.8
3,895,950 + HSERO_RS17020 0.47 +0.5
3,896,046 - HSERO_RS17020 0.55 +1.2
3,896,137 - HSERO_RS17020 0.62 -0.2
3,896,140 + HSERO_RS17020 0.63 -0.3
3,896,261 + HSERO_RS17020 0.72 +0.4
3,896,265 + HSERO_RS17020 0.73 -2.6
3,896,270 + HSERO_RS17020 0.73 +0.9
3,896,297 - HSERO_RS17020 0.75 +0.0
3,896,308 + HSERO_RS17020 0.76 -0.1

Or see this region's nucleotide sequence