Experiment: sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04550 and HSERO_RS04555 are separated by 49 nucleotides HSERO_RS04555 and HSERO_RS04560 are separated by 143 nucleotides
HSERO_RS04550: HSERO_RS04550 - capsid protein, at 993,697 to 994,740
_RS04550
HSERO_RS04555: HSERO_RS04555 - capsid protein, at 994,790 to 995,632
_RS04555
HSERO_RS04560: HSERO_RS04560 - terminase, at 995,776 to 997,557
_RS04560
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 993.909 kb on - strand, within HSERO_RS04550 at 994.402 kb on + strand, within HSERO_RS04550 at 994.500 kb on + strand, within HSERO_RS04550 at 994.748 kb on + strand at 994.867 kb on + strand at 994.931 kb on + strand, within HSERO_RS04555 at 995.194 kb on - strand, within HSERO_RS04555 at 995.263 kb on + strand, within HSERO_RS04555 at 995.324 kb on + strand, within HSERO_RS04555 at 995.325 kb on + strand, within HSERO_RS04555 at 995.446 kb on - strand, within HSERO_RS04555 at 995.492 kb on - strand, within HSERO_RS04555 at 995.565 kb on - strand at 995.708 kb on + strand at 995.975 kb on + strand, within HSERO_RS04560 at 996.063 kb on + strand, within HSERO_RS04560 at 996.189 kb on + strand, within HSERO_RS04560 at 996.212 kb on - strand, within HSERO_RS04560 at 996.350 kb on - strand, within HSERO_RS04560 at 996.448 kb on - strand, within HSERO_RS04560 at 996.455 kb on - strand, within HSERO_RS04560 at 996.471 kb on + strand, within HSERO_RS04560 at 996.517 kb on + strand, within HSERO_RS04560 at 996.522 kb on + strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.607 kb on - strand, within HSERO_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 100 mM remove 993,909 - HSERO_RS04550 0.20 -0.8 994,402 + HSERO_RS04550 0.68 -3.4 994,500 + HSERO_RS04550 0.77 +0.0 994,748 + +0.5 994,867 + -1.0 994,931 + HSERO_RS04555 0.17 -1.9 995,194 - HSERO_RS04555 0.48 -3.5 995,263 + HSERO_RS04555 0.56 -1.1 995,324 + HSERO_RS04555 0.63 -0.2 995,325 + HSERO_RS04555 0.63 +0.6 995,446 - HSERO_RS04555 0.78 -0.5 995,492 - HSERO_RS04555 0.83 +0.7 995,565 - -0.9 995,708 + +2.4 995,975 + HSERO_RS04560 0.11 -0.1 996,063 + HSERO_RS04560 0.16 +0.1 996,189 + HSERO_RS04560 0.23 +0.4 996,212 - HSERO_RS04560 0.24 +1.0 996,350 - HSERO_RS04560 0.32 -0.1 996,448 - HSERO_RS04560 0.38 +0.6 996,455 - HSERO_RS04560 0.38 +0.9 996,471 + HSERO_RS04560 0.39 +0.2 996,517 + HSERO_RS04560 0.42 +0.4 996,522 + HSERO_RS04560 0.42 -0.3 996,525 - HSERO_RS04560 0.42 -0.2 996,525 - HSERO_RS04560 0.42 -0.7 996,525 - HSERO_RS04560 0.42 +0.0 996,607 - HSERO_RS04560 0.47 +0.1
Or see this region's nucleotide sequence