Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03535

Experiment: sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03530 and HSERO_RS03535 are separated by 95 nucleotidesHSERO_RS03535 and HSERO_RS03540 are separated by 26 nucleotides HSERO_RS03530: HSERO_RS03530 - molecular chaperone SurA, at 768,717 to 770,207 _RS03530 HSERO_RS03535: HSERO_RS03535 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 770,303 to 771,325 _RS03535 HSERO_RS03540: HSERO_RS03540 - dimethyladenosine transferase, at 771,352 to 772,134 _RS03540 Position (kb) 770 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1at 771.575 kb on - strand, within HSERO_RS03540at 771.951 kb on + strand, within HSERO_RS03540at 772.250 kb on + strandat 772.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 100 mM
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771,575 - HSERO_RS03540 0.28 -3.0
771,951 + HSERO_RS03540 0.77 -2.2
772,250 + +0.5
772,304 - -0.6

Or see this region's nucleotide sequence