Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02070

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02060 and CA265_RS02065 are separated by 37 nucleotidesCA265_RS02065 and CA265_RS02070 are separated by 170 nucleotidesCA265_RS02070 and CA265_RS02075 are separated by 474 nucleotides CA265_RS02060: CA265_RS02060 - hypothetical protein, at 521,323 to 522,825 _RS02060 CA265_RS02065: CA265_RS02065 - hypothetical protein, at 522,863 to 523,537 _RS02065 CA265_RS02070: CA265_RS02070 - tyrosine--tRNA ligase, at 523,708 to 524,994 _RS02070 CA265_RS02075: CA265_RS02075 - hypothetical protein, at 525,469 to 526,266 _RS02075 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1at 522.713 kb on + strandat 522.714 kb on - strandat 522.754 kb on - strandat 522.775 kb on - strandat 522.811 kb on + strandat 522.850 kb on + strandat 522.853 kb on - strandat 522.902 kb on - strandat 522.902 kb on - strandat 522.903 kb on + strandat 522.947 kb on - strandat 522.971 kb on + strand, within CA265_RS02065at 523.043 kb on + strand, within CA265_RS02065at 523.043 kb on + strand, within CA265_RS02065at 523.044 kb on - strand, within CA265_RS02065at 523.055 kb on - strand, within CA265_RS02065at 523.055 kb on - strand, within CA265_RS02065at 523.165 kb on - strand, within CA265_RS02065at 523.175 kb on + strand, within CA265_RS02065at 523.262 kb on - strand, within CA265_RS02065at 523.271 kb on + strand, within CA265_RS02065at 523.271 kb on + strand, within CA265_RS02065at 523.272 kb on - strand, within CA265_RS02065at 523.274 kb on - strand, within CA265_RS02065at 523.274 kb on - strand, within CA265_RS02065at 523.291 kb on + strand, within CA265_RS02065at 523.350 kb on - strand, within CA265_RS02065at 523.498 kb on + strandat 523.499 kb on - strandat 523.518 kb on + strandat 523.568 kb on + strandat 523.599 kb on + strandat 523.600 kb on - strandat 523.638 kb on + strandat 523.639 kb on - strandat 523.660 kb on + strandat 525.017 kb on - strandat 525.055 kb on + strandat 525.055 kb on + strandat 525.126 kb on + strandat 525.174 kb on + strandat 525.203 kb on + strandat 525.289 kb on + strandat 525.289 kb on + strandat 525.290 kb on - strandat 525.290 kb on - strandat 525.298 kb on + strandat 525.323 kb on + strandat 525.345 kb on + strandat 525.346 kb on - strandat 525.470 kb on + strandat 525.616 kb on + strand, within CA265_RS02075at 525.630 kb on + strand, within CA265_RS02075at 525.630 kb on + strand, within CA265_RS02075at 525.630 kb on + strand, within CA265_RS02075at 525.702 kb on + strand, within CA265_RS02075at 525.763 kb on + strand, within CA265_RS02075at 525.874 kb on + strand, within CA265_RS02075at 525.970 kb on - strand, within CA265_RS02075

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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522,713 + -0.2
522,714 - -1.0
522,754 - -0.5
522,775 - +0.6
522,811 + -0.0
522,850 + +0.4
522,853 - -2.1
522,902 - -0.3
522,902 - -0.4
522,903 + +0.2
522,947 - +0.7
522,971 + CA265_RS02065 0.16 -0.5
523,043 + CA265_RS02065 0.27 -1.3
523,043 + CA265_RS02065 0.27 -0.2
523,044 - CA265_RS02065 0.27 -0.1
523,055 - CA265_RS02065 0.28 -0.2
523,055 - CA265_RS02065 0.28 -1.5
523,165 - CA265_RS02065 0.45 -1.7
523,175 + CA265_RS02065 0.46 -1.0
523,262 - CA265_RS02065 0.59 -0.3
523,271 + CA265_RS02065 0.60 -0.3
523,271 + CA265_RS02065 0.60 -0.9
523,272 - CA265_RS02065 0.61 +1.6
523,274 - CA265_RS02065 0.61 -0.7
523,274 - CA265_RS02065 0.61 -0.4
523,291 + CA265_RS02065 0.63 -0.7
523,350 - CA265_RS02065 0.72 -0.6
523,498 + -0.3
523,499 - +0.5
523,518 + -0.3
523,568 + -1.1
523,599 + -0.0
523,600 - +1.4
523,638 + -0.6
523,639 - +1.4
523,660 + -0.5
525,017 - +0.1
525,055 + +0.3
525,055 + -0.3
525,126 + -0.1
525,174 + +0.6
525,203 + +0.3
525,289 + +0.4
525,289 + -0.7
525,290 - +0.0
525,290 - -0.7
525,298 + -0.3
525,323 + -2.1
525,345 + +0.1
525,346 - -0.8
525,470 + -1.4
525,616 + CA265_RS02075 0.18 +1.7
525,630 + CA265_RS02075 0.20 +0.3
525,630 + CA265_RS02075 0.20 +0.1
525,630 + CA265_RS02075 0.20 +0.4
525,702 + CA265_RS02075 0.29 -2.3
525,763 + CA265_RS02075 0.37 -0.0
525,874 + CA265_RS02075 0.51 +0.2
525,970 - CA265_RS02075 0.63 +0.4

Or see this region's nucleotide sequence