Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00920 and CA265_RS00925 are separated by 150 nucleotides CA265_RS00925 and CA265_RS00930 are separated by 88 nucleotides CA265_RS00930 and CA265_RS00935 are separated by 6 nucleotides
CA265_RS00920: CA265_RS00920 - hypothetical protein, at 227,711 to 228,439
_RS00920
CA265_RS00925: CA265_RS00925 - hypothetical protein, at 228,590 to 229,051
_RS00925
CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504
_RS00930
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
Position (kb) 229
230
231
232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.196 kb on + strand, within CA265_RS00920 at 228.255 kb on + strand, within CA265_RS00920 at 228.272 kb on - strand, within CA265_RS00920 at 228.295 kb on + strand, within CA265_RS00920 at 228.296 kb on - strand, within CA265_RS00920 at 228.301 kb on - strand, within CA265_RS00920 at 228.313 kb on - strand, within CA265_RS00920 at 228.357 kb on - strand, within CA265_RS00920 at 228.370 kb on + strand at 228.380 kb on - strand at 228.430 kb on - strand at 228.432 kb on - strand at 228.451 kb on + strand at 228.455 kb on + strand at 228.493 kb on + strand at 228.551 kb on + strand at 228.578 kb on - strand at 228.659 kb on + strand, within CA265_RS00925 at 228.662 kb on - strand, within CA265_RS00925 at 228.683 kb on - strand, within CA265_RS00925 at 228.736 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.824 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.902 kb on - strand, within CA265_RS00925 at 228.967 kb on - strand, within CA265_RS00925 at 229.114 kb on - strand at 229.114 kb on - strand at 229.148 kb on + strand at 229.148 kb on + strand at 229.224 kb on + strand at 229.240 kb on + strand at 229.240 kb on + strand at 229.319 kb on + strand at 229.331 kb on - strand at 229.359 kb on - strand at 229.449 kb on + strand at 229.449 kb on + strand at 229.450 kb on - strand at 229.561 kb on - strand at 229.567 kb on - strand at 229.590 kb on + strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.598 kb on + strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.622 kb on + strand, within CA265_RS00930 at 229.642 kb on + strand, within CA265_RS00930 at 229.757 kb on + strand, within CA265_RS00930 at 229.812 kb on + strand, within CA265_RS00930 at 229.839 kb on + strand, within CA265_RS00930 at 229.945 kb on + strand, within CA265_RS00930 at 229.946 kb on - strand, within CA265_RS00930 at 229.986 kb on - strand, within CA265_RS00930 at 230.050 kb on + strand, within CA265_RS00930 at 230.069 kb on + strand, within CA265_RS00930 at 230.069 kb on + strand, within CA265_RS00930 at 230.070 kb on - strand, within CA265_RS00930 at 230.113 kb on + strand, within CA265_RS00930 at 230.144 kb on - strand, within CA265_RS00930 at 230.148 kb on - strand, within CA265_RS00930 at 230.198 kb on - strand, within CA265_RS00930 at 230.286 kb on - strand, within CA265_RS00930 at 230.287 kb on + strand, within CA265_RS00930 at 230.320 kb on + strand, within CA265_RS00930 at 230.320 kb on + strand, within CA265_RS00930 at 230.321 kb on - strand, within CA265_RS00930 at 230.336 kb on + strand, within CA265_RS00930 at 230.385 kb on - strand, within CA265_RS00930 at 230.524 kb on + strand, within CA265_RS00930 at 230.524 kb on + strand, within CA265_RS00930 at 230.525 kb on - strand, within CA265_RS00930 at 230.527 kb on - strand, within CA265_RS00930 at 230.577 kb on - strand, within CA265_RS00930 at 230.615 kb on + strand, within CA265_RS00930 at 230.616 kb on - strand, within CA265_RS00930 at 230.628 kb on - strand, within CA265_RS00930 at 230.631 kb on + strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.635 kb on + strand, within CA265_RS00930 at 230.669 kb on - strand, within CA265_RS00930 at 230.702 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.752 kb on - strand, within CA265_RS00930 at 230.810 kb on + strand, within CA265_RS00930 at 230.835 kb on - strand, within CA265_RS00930 at 230.878 kb on + strand, within CA265_RS00930 at 231.009 kb on - strand, within CA265_RS00930 at 231.009 kb on - strand, within CA265_RS00930 at 231.199 kb on + strand, within CA265_RS00930 at 231.200 kb on - strand, within CA265_RS00930 at 231.200 kb on - strand, within CA265_RS00930 at 231.244 kb on - strand, within CA265_RS00930 at 231.290 kb on + strand, within CA265_RS00930 at 231.336 kb on - strand, within CA265_RS00930 at 231.363 kb on + strand, within CA265_RS00930 at 231.364 kb on - strand, within CA265_RS00930 at 231.401 kb on + strand, within CA265_RS00930 at 231.402 kb on - strand, within CA265_RS00930 at 231.402 kb on - strand, within CA265_RS00930 at 231.459 kb on - strand, within CA265_RS00930 at 231.521 kb on - strand, within CA265_RS00930 at 231.550 kb on + strand, within CA265_RS00930 at 231.555 kb on - strand, within CA265_RS00930 at 231.586 kb on + strand, within CA265_RS00930 at 231.710 kb on + strand, within CA265_RS00930 at 231.725 kb on - strand, within CA265_RS00930 at 231.729 kb on + strand, within CA265_RS00930 at 231.729 kb on + strand, within CA265_RS00930 at 231.750 kb on - strand, within CA265_RS00930 at 231.761 kb on + strand, within CA265_RS00930 at 231.800 kb on - strand, within CA265_RS00930 at 231.819 kb on + strand, within CA265_RS00930 at 231.858 kb on + strand, within CA265_RS00930 at 231.858 kb on + strand, within CA265_RS00930 at 231.892 kb on + strand, within CA265_RS00930 at 231.892 kb on + strand, within CA265_RS00930 at 231.893 kb on - strand, within CA265_RS00930 at 231.893 kb on - strand, within CA265_RS00930 at 231.947 kb on + strand, within CA265_RS00930 at 231.992 kb on + strand, within CA265_RS00930 at 232.035 kb on - strand, within CA265_RS00930 at 232.048 kb on + strand, within CA265_RS00930 at 232.049 kb on - strand, within CA265_RS00930 at 232.069 kb on + strand, within CA265_RS00930 at 232.186 kb on + strand, within CA265_RS00930 at 232.230 kb on + strand, within CA265_RS00930 at 232.230 kb on + strand, within CA265_RS00930 at 232.235 kb on - strand, within CA265_RS00930 at 232.237 kb on + strand, within CA265_RS00930 at 232.304 kb on + strand, within CA265_RS00930 at 232.305 kb on - strand, within CA265_RS00930 at 232.358 kb on - strand, within CA265_RS00930 at 232.387 kb on + strand, within CA265_RS00930 at 232.388 kb on - strand, within CA265_RS00930 at 232.388 kb on - strand, within CA265_RS00930 at 232.393 kb on + strand, within CA265_RS00930 at 232.393 kb on + strand, within CA265_RS00930 at 232.414 kb on - strand, within CA265_RS00930 at 232.414 kb on - strand, within CA265_RS00930 at 232.417 kb on - strand, within CA265_RS00930 at 232.452 kb on - strand, within CA265_RS00930 at 232.506 kb on - strand, within CA265_RS00930 at 232.546 kb on - strand, within CA265_RS00930 at 232.564 kb on + strand, within CA265_RS00930 at 232.568 kb on + strand, within CA265_RS00930 at 232.648 kb on - strand, within CA265_RS00930 at 232.660 kb on + strand, within CA265_RS00930 at 232.685 kb on - strand, within CA265_RS00930 at 232.704 kb on + strand, within CA265_RS00930 at 232.817 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.943 kb on + strand, within CA265_RS00930 at 232.944 kb on - strand, within CA265_RS00930 at 233.022 kb on - strand, within CA265_RS00930 at 233.032 kb on + strand, within CA265_RS00930 at 233.057 kb on + strand, within CA265_RS00930 at 233.078 kb on + strand at 233.098 kb on - strand at 233.105 kb on + strand at 233.134 kb on + strand at 233.134 kb on + strand at 233.242 kb on + strand at 233.340 kb on - strand at 233.433 kb on + strand at 233.436 kb on + strand at 233.502 kb on + strand at 233.502 kb on + strand at 233.507 kb on + strand at 233.507 kb on + strand at 233.508 kb on - strand at 233.615 kb on + strand at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.661 kb on - strand, within CA265_RS00935 at 233.705 kb on + strand, within CA265_RS00935 at 233.706 kb on - strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.772 kb on + strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.801 kb on + strand, within CA265_RS00935 at 233.850 kb on + strand, within CA265_RS00935 at 233.871 kb on + strand, within CA265_RS00935 at 233.901 kb on - strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 234.001 kb on + strand, within CA265_RS00935 at 234.037 kb on + strand, within CA265_RS00935 at 234.045 kb on - strand, within CA265_RS00935 at 234.140 kb on + strand, within CA265_RS00935 at 234.141 kb on - strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.145 kb on - strand, within CA265_RS00935 at 234.162 kb on - strand, within CA265_RS00935 at 234.206 kb on + strand, within CA265_RS00935 at 234.207 kb on - strand, within CA265_RS00935 at 234.261 kb on - strand, within CA265_RS00935 at 234.339 kb on - strand, within CA265_RS00935 at 234.397 kb on + strand, within CA265_RS00935 at 234.398 kb on - strand, within CA265_RS00935 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 228,196 + CA265_RS00920 0.67 -1.3 228,255 + CA265_RS00920 0.75 -0.9 228,272 - CA265_RS00920 0.77 +0.4 228,295 + CA265_RS00920 0.80 +0.3 228,296 - CA265_RS00920 0.80 +0.7 228,301 - CA265_RS00920 0.81 +0.9 228,313 - CA265_RS00920 0.83 +0.0 228,357 - CA265_RS00920 0.89 -1.5 228,370 + +0.7 228,380 - +0.1 228,430 - +0.6 228,432 - +0.3 228,451 + +1.3 228,455 + -0.3 228,493 + -0.6 228,551 + +1.3 228,578 - +0.8 228,659 + CA265_RS00925 0.15 +0.2 228,662 - CA265_RS00925 0.16 +0.7 228,683 - CA265_RS00925 0.20 +0.1 228,736 + CA265_RS00925 0.32 -1.1 228,754 + CA265_RS00925 0.35 +0.4 228,754 + CA265_RS00925 0.35 +0.1 228,824 + CA265_RS00925 0.51 +0.5 228,901 + CA265_RS00925 0.67 +0.2 228,901 + CA265_RS00925 0.67 -0.3 228,902 - CA265_RS00925 0.68 +0.9 228,967 - CA265_RS00925 0.82 +0.0 229,114 - -1.2 229,114 - +0.1 229,148 + -0.7 229,148 + -0.3 229,224 + -0.1 229,240 + -0.0 229,240 + -0.5 229,319 + +0.1 229,331 - +1.0 229,359 - +0.5 229,449 + -0.9 229,449 + -1.3 229,450 - -0.2 229,561 - +0.1 229,567 - +0.5 229,590 + CA265_RS00930 0.10 -0.2 229,591 - CA265_RS00930 0.10 +0.9 229,591 - CA265_RS00930 0.10 -0.4 229,598 + CA265_RS00930 0.10 -0.9 229,599 - CA265_RS00930 0.11 -1.0 229,599 - CA265_RS00930 0.11 -1.3 229,603 - CA265_RS00930 0.11 -0.2 229,603 - CA265_RS00930 0.11 -0.5 229,603 - CA265_RS00930 0.11 -0.3 229,603 - CA265_RS00930 0.11 +0.8 229,622 + CA265_RS00930 0.11 -0.5 229,642 + CA265_RS00930 0.12 -1.9 229,757 + CA265_RS00930 0.14 -1.1 229,812 + CA265_RS00930 0.15 +0.2 229,839 + CA265_RS00930 0.16 -0.2 229,945 + CA265_RS00930 0.18 -0.7 229,946 - CA265_RS00930 0.18 +0.5 229,986 - CA265_RS00930 0.19 +0.0 230,050 + CA265_RS00930 0.21 -0.4 230,069 + CA265_RS00930 0.21 -0.5 230,069 + CA265_RS00930 0.21 +0.1 230,070 - CA265_RS00930 0.21 -0.3 230,113 + CA265_RS00930 0.22 -0.8 230,144 - CA265_RS00930 0.23 +0.6 230,148 - CA265_RS00930 0.23 -0.8 230,198 - CA265_RS00930 0.24 +0.1 230,286 - CA265_RS00930 0.26 +0.4 230,287 + CA265_RS00930 0.26 -1.2 230,320 + CA265_RS00930 0.27 -0.6 230,320 + CA265_RS00930 0.27 -0.6 230,321 - CA265_RS00930 0.27 +0.2 230,336 + CA265_RS00930 0.27 -0.5 230,385 - CA265_RS00930 0.29 +0.4 230,524 + CA265_RS00930 0.32 -0.6 230,524 + CA265_RS00930 0.32 -0.5 230,525 - CA265_RS00930 0.32 +0.1 230,527 - CA265_RS00930 0.32 +0.9 230,577 - CA265_RS00930 0.33 +0.2 230,615 + CA265_RS00930 0.34 +0.2 230,616 - CA265_RS00930 0.34 +0.9 230,628 - CA265_RS00930 0.34 -0.2 230,631 + CA265_RS00930 0.34 -0.6 230,632 - CA265_RS00930 0.34 -0.8 230,632 - CA265_RS00930 0.34 +1.5 230,632 - CA265_RS00930 0.34 +0.8 230,635 + CA265_RS00930 0.34 +0.9 230,669 - CA265_RS00930 0.35 -0.7 230,702 - CA265_RS00930 0.36 -0.5 230,714 - CA265_RS00930 0.36 +0.1 230,714 - CA265_RS00930 0.36 -0.2 230,714 - CA265_RS00930 0.36 +0.1 230,752 - CA265_RS00930 0.37 +0.1 230,810 + CA265_RS00930 0.38 +0.2 230,835 - CA265_RS00930 0.39 +0.2 230,878 + CA265_RS00930 0.40 -0.1 231,009 - CA265_RS00930 0.43 +0.1 231,009 - CA265_RS00930 0.43 +0.2 231,199 + CA265_RS00930 0.47 +0.4 231,200 - CA265_RS00930 0.47 +1.0 231,200 - CA265_RS00930 0.47 +0.5 231,244 - CA265_RS00930 0.48 -1.8 231,290 + CA265_RS00930 0.49 +0.6 231,336 - CA265_RS00930 0.50 -0.0 231,363 + CA265_RS00930 0.51 +0.9 231,364 - CA265_RS00930 0.51 +0.2 231,401 + CA265_RS00930 0.52 -0.0 231,402 - CA265_RS00930 0.52 +0.1 231,402 - CA265_RS00930 0.52 +0.9 231,459 - CA265_RS00930 0.53 +0.4 231,521 - CA265_RS00930 0.55 +0.3 231,550 + CA265_RS00930 0.55 -0.3 231,555 - CA265_RS00930 0.55 -1.3 231,586 + CA265_RS00930 0.56 +0.3 231,710 + CA265_RS00930 0.59 -0.4 231,725 - CA265_RS00930 0.59 +0.2 231,729 + CA265_RS00930 0.59 -0.4 231,729 + CA265_RS00930 0.59 -1.4 231,750 - CA265_RS00930 0.60 +0.4 231,761 + CA265_RS00930 0.60 +0.5 231,800 - CA265_RS00930 0.61 +0.2 231,819 + CA265_RS00930 0.61 -0.4 231,858 + CA265_RS00930 0.62 +0.2 231,858 + CA265_RS00930 0.62 -0.9 231,892 + CA265_RS00930 0.63 +0.5 231,892 + CA265_RS00930 0.63 -1.3 231,893 - CA265_RS00930 0.63 -0.1 231,893 - CA265_RS00930 0.63 +0.9 231,947 + CA265_RS00930 0.64 +1.1 231,992 + CA265_RS00930 0.65 +0.3 232,035 - CA265_RS00930 0.66 +0.0 232,048 + CA265_RS00930 0.67 +0.3 232,049 - CA265_RS00930 0.67 -0.3 232,069 + CA265_RS00930 0.67 +0.9 232,186 + CA265_RS00930 0.70 -0.5 232,230 + CA265_RS00930 0.71 +0.4 232,230 + CA265_RS00930 0.71 +0.6 232,235 - CA265_RS00930 0.71 +1.4 232,237 + CA265_RS00930 0.71 -0.1 232,304 + CA265_RS00930 0.72 -0.1 232,305 - CA265_RS00930 0.73 -0.1 232,358 - CA265_RS00930 0.74 +0.9 232,387 + CA265_RS00930 0.74 -0.4 232,388 - CA265_RS00930 0.74 +0.2 232,388 - CA265_RS00930 0.74 -1.3 232,393 + CA265_RS00930 0.75 -2.5 232,393 + CA265_RS00930 0.75 +0.2 232,414 - CA265_RS00930 0.75 +1.9 232,414 - CA265_RS00930 0.75 -0.6 232,417 - CA265_RS00930 0.75 +0.2 232,452 - CA265_RS00930 0.76 -0.9 232,506 - CA265_RS00930 0.77 +0.9 232,546 - CA265_RS00930 0.78 -0.7 232,564 + CA265_RS00930 0.78 -0.3 232,568 + CA265_RS00930 0.79 -0.2 232,648 - CA265_RS00930 0.80 -0.1 232,660 + CA265_RS00930 0.81 +0.2 232,685 - CA265_RS00930 0.81 +0.4 232,704 + CA265_RS00930 0.82 +0.2 232,817 - CA265_RS00930 0.84 +1.3 232,831 - CA265_RS00930 0.85 +0.1 232,831 - CA265_RS00930 0.85 +0.5 232,831 - CA265_RS00930 0.85 -0.1 232,943 + CA265_RS00930 0.87 -0.6 232,944 - CA265_RS00930 0.87 +0.7 233,022 - CA265_RS00930 0.89 +0.6 233,032 + CA265_RS00930 0.89 +0.1 233,057 + CA265_RS00930 0.90 +0.9 233,078 + +0.1 233,098 - -1.3 233,105 + -0.2 233,134 + -1.1 233,134 + +0.5 233,242 + +0.1 233,340 - -0.5 233,433 + +0.6 233,436 + +0.8 233,502 + -2.7 233,502 + +0.1 233,507 + -0.6 233,507 + +0.9 233,508 - -0.3 233,615 + +0.2 233,660 + CA265_RS00935 0.13 -3.0 233,660 + CA265_RS00935 0.13 -0.8 233,660 + CA265_RS00935 0.13 -1.1 233,661 - CA265_RS00935 0.13 +0.5 233,705 + CA265_RS00935 0.17 -0.4 233,706 - CA265_RS00935 0.17 +0.7 233,752 + CA265_RS00935 0.21 -0.2 233,752 + CA265_RS00935 0.21 -1.0 233,758 + CA265_RS00935 0.22 +1.5 233,758 + CA265_RS00935 0.22 -1.2 233,772 + CA265_RS00935 0.23 -0.3 233,773 - CA265_RS00935 0.23 +0.2 233,773 - CA265_RS00935 0.23 +0.5 233,801 + CA265_RS00935 0.26 -0.4 233,850 + CA265_RS00935 0.30 +0.5 233,871 + CA265_RS00935 0.32 +0.6 233,901 - CA265_RS00935 0.34 +1.1 233,913 + CA265_RS00935 0.35 -1.1 233,913 + CA265_RS00935 0.35 -0.2 233,915 + CA265_RS00935 0.36 -0.7 233,915 + CA265_RS00935 0.36 -0.6 234,001 + CA265_RS00935 0.43 -0.0 234,037 + CA265_RS00935 0.46 +0.8 234,045 - CA265_RS00935 0.47 +0.3 234,140 + CA265_RS00935 0.55 -0.1 234,141 - CA265_RS00935 0.56 -0.5 234,144 + CA265_RS00935 0.56 -0.5 234,144 + CA265_RS00935 0.56 -0.9 234,145 - CA265_RS00935 0.56 -0.1 234,162 - CA265_RS00935 0.57 +0.4 234,206 + CA265_RS00935 0.61 -1.4 234,207 - CA265_RS00935 0.61 -2.0 234,261 - CA265_RS00935 0.66 +0.9 234,339 - CA265_RS00935 0.73 -1.1 234,397 + CA265_RS00935 0.78 -0.5 234,398 - CA265_RS00935 0.78 -0.0 234,431 - CA265_RS00935 0.81 -1.2 234,470 + CA265_RS00935 0.85 -1.0
Or see this region's nucleotide sequence