Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34300

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34290 and BPHYT_RS34295 are separated by 77 nucleotidesBPHYT_RS34295 and BPHYT_RS34300 are separated by 342 nucleotidesBPHYT_RS34300 and BPHYT_RS34305 are separated by 121 nucleotides BPHYT_RS34290: BPHYT_RS34290 - molecular chaperone EcpD, at 3,298,452 to 3,299,195 _RS34290 BPHYT_RS34295: BPHYT_RS34295 - fimbrial protein, at 3,299,273 to 3,299,830 _RS34295 BPHYT_RS34300: BPHYT_RS34300 - major facilitator transporter, at 3,300,173 to 3,301,555 _RS34300 BPHYT_RS34305: BPHYT_RS34305 - succinate-semialdehyde dehydrogenase, at 3,301,677 to 3,303,116 _RS34305 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -2 -1 0 1at 3299.352 kb on + strand, within BPHYT_RS34295at 3299.885 kb on + strandat 3300.058 kb on + strandat 3300.151 kb on - strandat 3300.682 kb on + strand, within BPHYT_RS34300at 3300.683 kb on - strand, within BPHYT_RS34300at 3300.907 kb on + strand, within BPHYT_RS34300at 3300.993 kb on + strand, within BPHYT_RS34300at 3301.182 kb on + strand, within BPHYT_RS34300at 3301.736 kb on - strandat 3302.249 kb on - strand, within BPHYT_RS34305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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3,299,352 + BPHYT_RS34295 0.14 -1.8
3,299,885 + -0.3
3,300,058 + -0.4
3,300,151 - +0.4
3,300,682 + BPHYT_RS34300 0.37 -0.7
3,300,683 - BPHYT_RS34300 0.37 -1.1
3,300,907 + BPHYT_RS34300 0.53 -2.2
3,300,993 + BPHYT_RS34300 0.59 -0.1
3,301,182 + BPHYT_RS34300 0.73 -0.3
3,301,736 - -0.3
3,302,249 - BPHYT_RS34305 0.40 -1.1

Or see this region's nucleotide sequence