Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33765

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33760 and BPHYT_RS33765 are separated by 360 nucleotidesBPHYT_RS33765 and BPHYT_RS33770 are separated by 465 nucleotides BPHYT_RS33760: BPHYT_RS33760 - sorbitol dehydrogenase, at 3,156,822 to 3,157,415 _RS33760 BPHYT_RS33765: BPHYT_RS33765 - membrane protein, at 3,157,776 to 3,158,438 _RS33765 BPHYT_RS33770: BPHYT_RS33770 - alpha-amylase, at 3,158,904 to 3,162,248 _RS33770 Position (kb) 3157 3158 3159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3157.405 kb on - strandat 3157.494 kb on + strandat 3157.510 kb on + strandat 3157.692 kb on + strandat 3157.737 kb on + strandat 3157.789 kb on - strandat 3157.927 kb on - strand, within BPHYT_RS33765at 3158.437 kb on - strandat 3158.439 kb on + strandat 3158.528 kb on + strandat 3158.529 kb on - strandat 3158.636 kb on + strandat 3158.937 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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3,157,405 - -0.2
3,157,494 + -0.1
3,157,510 + -0.4
3,157,692 + -0.2
3,157,737 + +2.0
3,157,789 - -0.2
3,157,927 - BPHYT_RS33765 0.23 -4.0
3,158,437 - -0.4
3,158,439 + -0.2
3,158,528 + +1.0
3,158,529 - +0.8
3,158,636 + -0.7
3,158,937 + +0.1

Or see this region's nucleotide sequence