Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32470

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32465 and BPHYT_RS32470 are separated by 3 nucleotidesBPHYT_RS32470 and BPHYT_RS32475 are separated by 18 nucleotides BPHYT_RS32465: BPHYT_RS32465 - membrane protein, at 2,856,612 to 2,857,667 _RS32465 BPHYT_RS32470: BPHYT_RS32470 - membrane protein, at 2,857,671 to 2,857,805 _RS32470 BPHYT_RS32475: BPHYT_RS32475 - dihydroxyacetone kinase, at 2,857,824 to 2,859,527 _RS32475 Position (kb) 2857 2858Strain fitness (log2 ratio) -2 -1 0 1at 2856.816 kb on + strand, within BPHYT_RS32465at 2856.817 kb on - strand, within BPHYT_RS32465at 2857.323 kb on + strand, within BPHYT_RS32465at 2857.323 kb on + strand, within BPHYT_RS32465at 2857.324 kb on - strand, within BPHYT_RS32465at 2857.550 kb on - strand, within BPHYT_RS32465at 2857.680 kb on - strandat 2857.725 kb on + strand, within BPHYT_RS32470at 2857.773 kb on - strand, within BPHYT_RS32470at 2857.897 kb on - strandat 2857.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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2,856,816 + BPHYT_RS32465 0.19 +0.4
2,856,817 - BPHYT_RS32465 0.19 +0.0
2,857,323 + BPHYT_RS32465 0.67 -1.0
2,857,323 + BPHYT_RS32465 0.67 -1.1
2,857,324 - BPHYT_RS32465 0.67 +0.1
2,857,550 - BPHYT_RS32465 0.89 +0.1
2,857,680 - -0.9
2,857,725 + BPHYT_RS32470 0.40 -1.0
2,857,773 - BPHYT_RS32470 0.76 -1.2
2,857,897 - -2.1
2,857,915 + -0.2

Or see this region's nucleotide sequence