Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27425

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27415 and BPHYT_RS27420 are separated by 55 nucleotidesBPHYT_RS27420 and BPHYT_RS27425 are separated by 40 nucleotidesBPHYT_RS27425 and BPHYT_RS27430 overlap by 4 nucleotides BPHYT_RS27415: BPHYT_RS27415 - major facilitator transporter, at 1,724,939 to 1,726,237 _RS27415 BPHYT_RS27420: BPHYT_RS27420 - molybdenum ABC transporter substrate-binding protein, at 1,726,293 to 1,727,075 _RS27420 BPHYT_RS27425: BPHYT_RS27425 - C4-dicarboxylate ABC transporter, at 1,727,116 to 1,728,417 _RS27425 BPHYT_RS27430: BPHYT_RS27430 - LysR family transcriptional regulator, at 1,728,414 to 1,729,382 _RS27430 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -1 0 1 2 3 4at 1726.222 kb on - strandat 1726.745 kb on + strand, within BPHYT_RS27420at 1727.401 kb on - strand, within BPHYT_RS27425at 1727.401 kb on - strand, within BPHYT_RS27425at 1727.735 kb on + strand, within BPHYT_RS27425at 1728.069 kb on + strand, within BPHYT_RS27425at 1728.070 kb on - strand, within BPHYT_RS27425at 1728.247 kb on - strand, within BPHYT_RS27425at 1728.386 kb on + strandat 1728.387 kb on - strandat 1728.539 kb on + strand, within BPHYT_RS27430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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1,726,222 - -0.3
1,726,745 + BPHYT_RS27420 0.58 +0.2
1,727,401 - BPHYT_RS27425 0.22 -0.7
1,727,401 - BPHYT_RS27425 0.22 +0.1
1,727,735 + BPHYT_RS27425 0.48 -1.7
1,728,069 + BPHYT_RS27425 0.73 +4.0
1,728,070 - BPHYT_RS27425 0.73 -1.5
1,728,247 - BPHYT_RS27425 0.87 -1.3
1,728,386 + +0.7
1,728,387 - +0.3
1,728,539 + BPHYT_RS27430 0.13 +0.2

Or see this region's nucleotide sequence