Experiment: LB, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24935 and BPHYT_RS24940 are separated by 97 nucleotides BPHYT_RS24940 and BPHYT_RS24945 are separated by 321 nucleotides BPHYT_RS24945 and BPHYT_RS24950 are separated by 96 nucleotides BPHYT_RS24950 and BPHYT_RS24955 are separated by 111 nucleotides
BPHYT_RS24935: BPHYT_RS24935 - cysteinyl-tRNA synthetase, at 1,165,995 to 1,167,383
_RS24935
BPHYT_RS24940: BPHYT_RS24940 - hypothetical protein, at 1,167,481 to 1,167,729
_RS24940
BPHYT_RS24945: BPHYT_RS24945 - alkylhydroperoxidase, at 1,168,051 to 1,168,443
_RS24945
BPHYT_RS24950: BPHYT_RS24950 - HAD family hydrolase, at 1,168,540 to 1,169,232
_RS24950
BPHYT_RS24955: BPHYT_RS24955 - cytochrome C peroxidase, at 1,169,344 to 1,170,786
_RS24955
Position (kb) 1168
1169 Strain fitness (log2 ratio) -1
0
1 at 1167.355 kb on + strand at 1167.356 kb on - strand at 1167.381 kb on + strand at 1167.845 kb on - strand at 1168.162 kb on + strand, within BPHYT_RS24945 at 1168.163 kb on - strand, within BPHYT_RS24945 at 1168.261 kb on + strand, within BPHYT_RS24945 at 1168.262 kb on - strand, within BPHYT_RS24945
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 37C remove 1,167,355 + -0.4 1,167,356 - -0.4 1,167,381 + +0.2 1,167,845 - -0.8 1,168,162 + BPHYT_RS24945 0.28 +0.6 1,168,163 - BPHYT_RS24945 0.28 -0.8 1,168,261 + BPHYT_RS24945 0.53 -1.1 1,168,262 - BPHYT_RS24945 0.54 -1.6
Or see this region's nucleotide sequence