Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23515

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23510 and BPHYT_RS23515 are separated by 366 nucleotidesBPHYT_RS23515 and BPHYT_RS23520 are separated by 573 nucleotides BPHYT_RS23510: BPHYT_RS23510 - AMP-dependent synthetase, at 840,776 to 842,320 _RS23510 BPHYT_RS23515: BPHYT_RS23515 - porin, at 842,687 to 843,859 _RS23515 BPHYT_RS23520: BPHYT_RS23520 - peroxidase, at 844,433 to 845,500 _RS23520 Position (kb) 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1at 842.601 kb on - strandat 842.905 kb on - strand, within BPHYT_RS23515at 842.937 kb on + strand, within BPHYT_RS23515at 842.942 kb on - strand, within BPHYT_RS23515at 843.379 kb on - strand, within BPHYT_RS23515at 843.501 kb on + strand, within BPHYT_RS23515at 843.843 kb on - strandat 844.771 kb on - strand, within BPHYT_RS23520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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842,601 - -2.2
842,905 - BPHYT_RS23515 0.19 -1.3
842,937 + BPHYT_RS23515 0.21 -2.8
842,942 - BPHYT_RS23515 0.22 -0.3
843,379 - BPHYT_RS23515 0.59 -0.9
843,501 + BPHYT_RS23515 0.69 -0.5
843,843 - +0.1
844,771 - BPHYT_RS23520 0.32 -0.5

Or see this region's nucleotide sequence