Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14370

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14360 and BPHYT_RS14365 overlap by 14 nucleotidesBPHYT_RS14365 and BPHYT_RS14370 are separated by 90 nucleotidesBPHYT_RS14370 and BPHYT_RS14375 are separated by 212 nucleotides BPHYT_RS14360: BPHYT_RS14360 - DNA repair protein RecO, at 3,277,752 to 3,278,681 _RS14360 BPHYT_RS14365: BPHYT_RS14365 - GTPase Era, at 3,278,668 to 3,279,531 _RS14365 BPHYT_RS14370: BPHYT_RS14370 - ribonuclease III, at 3,279,622 to 3,280,851 _RS14370 BPHYT_RS14375: BPHYT_RS14375 - signal peptidase, at 3,281,064 to 3,281,957 _RS14375 Position (kb) 3279 3280 3281Strain fitness (log2 ratio) -3 -2 -1 0 1at 3278.682 kb on - strandat 3279.963 kb on - strand, within BPHYT_RS14370at 3279.963 kb on - strand, within BPHYT_RS14370at 3280.470 kb on - strand, within BPHYT_RS14370at 3280.470 kb on - strand, within BPHYT_RS14370at 3280.871 kb on - strandat 3280.888 kb on - strandat 3280.968 kb on + strandat 3280.968 kb on + strandat 3280.968 kb on + strandat 3280.968 kb on + strandat 3280.973 kb on + strandat 3280.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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3,278,682 - +1.7
3,279,963 - BPHYT_RS14370 0.28 -2.9
3,279,963 - BPHYT_RS14370 0.28 -0.5
3,280,470 - BPHYT_RS14370 0.69 -2.1
3,280,470 - BPHYT_RS14370 0.69 -1.1
3,280,871 - +0.4
3,280,888 - -0.6
3,280,968 + -0.6
3,280,968 + +0.3
3,280,968 + -0.0
3,280,968 + -0.8
3,280,973 + -2.2
3,280,974 - -0.4

Or see this region's nucleotide sequence