Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07600

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07595 and BPHYT_RS07600 are separated by 61 nucleotidesBPHYT_RS07600 and BPHYT_RS07605 are separated by 585 nucleotides BPHYT_RS07595: BPHYT_RS07595 - membrane protein, at 1,726,998 to 1,728,911 _RS07595 BPHYT_RS07600: BPHYT_RS07600 - amino acid ABC transporter substrate-binding protein, at 1,728,973 to 1,730,124 _RS07600 BPHYT_RS07605: BPHYT_RS07605 - hypothetical protein, at 1,730,710 to 1,731,171 _RS07605 Position (kb) 1728 1729 1730 1731Strain fitness (log2 ratio) -3 -2 -1 0 1at 1728.350 kb on + strand, within BPHYT_RS07595at 1728.351 kb on - strand, within BPHYT_RS07595at 1729.026 kb on - strandat 1729.184 kb on + strand, within BPHYT_RS07600at 1729.284 kb on - strand, within BPHYT_RS07600at 1730.226 kb on + strandat 1730.313 kb on + strandat 1730.313 kb on + strandat 1730.437 kb on - strandat 1730.442 kb on + strandat 1730.443 kb on - strandat 1730.483 kb on + strandat 1730.483 kb on + strandat 1730.531 kb on - strandat 1731.008 kb on + strand, within BPHYT_RS07605at 1731.012 kb on - strand, within BPHYT_RS07605at 1731.012 kb on - strand, within BPHYT_RS07605

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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1,728,350 + BPHYT_RS07595 0.71 -2.8
1,728,351 - BPHYT_RS07595 0.71 +0.1
1,729,026 - +0.3
1,729,184 + BPHYT_RS07600 0.18 -0.7
1,729,284 - BPHYT_RS07600 0.27 -1.5
1,730,226 + -0.0
1,730,313 + -0.3
1,730,313 + -3.2
1,730,437 - -0.5
1,730,442 + +0.0
1,730,443 - +0.7
1,730,483 + +0.4
1,730,483 + -0.7
1,730,531 - +0.0
1,731,008 + BPHYT_RS07605 0.65 -1.1
1,731,012 - BPHYT_RS07605 0.65 +1.1
1,731,012 - BPHYT_RS07605 0.65 +1.2

Or see this region's nucleotide sequence