Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02970

Experiment: LB, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02965 and BPHYT_RS02970 are separated by 37 nucleotidesBPHYT_RS02970 and BPHYT_RS02975 are separated by 386 nucleotides BPHYT_RS02965: BPHYT_RS02965 - membrane protein, at 658,575 to 659,660 _RS02965 BPHYT_RS02970: BPHYT_RS02970 - excinuclease ABC subunit A, at 659,698 to 662,571 _RS02970 BPHYT_RS02975: BPHYT_RS02975 - membrane protein, at 662,958 to 664,115 _RS02975 Position (kb) 659 660 661 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 659.066 kb on + strand, within BPHYT_RS02965at 659.066 kb on + strand, within BPHYT_RS02965at 659.067 kb on - strand, within BPHYT_RS02965at 659.540 kb on + strand, within BPHYT_RS02965at 659.543 kb on - strand, within BPHYT_RS02965at 659.614 kb on - strandat 659.666 kb on - strandat 659.666 kb on - strandat 659.696 kb on - strandat 659.700 kb on - strandat 659.892 kb on + strandat 659.895 kb on + strandat 659.895 kb on + strandat 659.896 kb on - strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.978 kb on - strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.983 kb on + strandat 659.983 kb on + strandat 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.084 kb on - strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.203 kb on + strand, within BPHYT_RS02970at 660.204 kb on - strand, within BPHYT_RS02970at 660.230 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strandat 660.264 kb on - strand, within BPHYT_RS02970at 660.337 kb on + strand, within BPHYT_RS02970at 660.338 kb on - strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.432 kb on - strand, within BPHYT_RS02970at 660.575 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.764 kb on + strand, within BPHYT_RS02970at 660.765 kb on - strand, within BPHYT_RS02970at 660.765 kb on - strand, within BPHYT_RS02970at 660.765 kb on - strand, within BPHYT_RS02970at 660.765 kb on - strand, within BPHYT_RS02970at 660.869 kb on + strand, within BPHYT_RS02970at 660.870 kb on - strand, within BPHYT_RS02970at 661.007 kb on + strand, within BPHYT_RS02970at 661.007 kb on + strand, within BPHYT_RS02970at 661.007 kb on + strand, within BPHYT_RS02970at 661.008 kb on - strand, within BPHYT_RS02970at 661.008 kb on - strand, within BPHYT_RS02970at 661.106 kb on + strand, within BPHYT_RS02970at 661.107 kb on - strand, within BPHYT_RS02970at 661.107 kb on - strand, within BPHYT_RS02970at 661.107 kb on - strand, within BPHYT_RS02970at 661.349 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.429 kb on + strand, within BPHYT_RS02970at 661.430 kb on - strand, within BPHYT_RS02970at 661.469 kb on + strand, within BPHYT_RS02970at 661.469 kb on + strand, within BPHYT_RS02970at 661.469 kb on + strand, within BPHYT_RS02970at 661.470 kb on - strand, within BPHYT_RS02970at 661.470 kb on - strand, within BPHYT_RS02970at 661.991 kb on + strand, within BPHYT_RS02970at 661.991 kb on + strand, within BPHYT_RS02970at 661.992 kb on - strand, within BPHYT_RS02970at 661.992 kb on - strand, within BPHYT_RS02970at 661.992 kb on - strand, within BPHYT_RS02970at 661.992 kb on - strand, within BPHYT_RS02970at 662.217 kb on - strand, within BPHYT_RS02970at 662.252 kb on + strand, within BPHYT_RS02970at 662.252 kb on + strand, within BPHYT_RS02970at 662.253 kb on - strand, within BPHYT_RS02970at 662.253 kb on - strand, within BPHYT_RS02970at 662.394 kb on - strandat 662.414 kb on + strandat 662.415 kb on - strandat 662.415 kb on - strandat 662.510 kb on - strandat 662.610 kb on - strandat 662.618 kb on + strandat 662.618 kb on + strandat 662.618 kb on + strandat 662.618 kb on + strandat 662.621 kb on + strandat 662.621 kb on + strandat 662.621 kb on + strandat 662.621 kb on + strandat 662.621 kb on + strandat 662.687 kb on + strandat 662.745 kb on - strandat 663.147 kb on + strand, within BPHYT_RS02975

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 37C
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659,066 + BPHYT_RS02965 0.45 +0.7
659,066 + BPHYT_RS02965 0.45 +3.1
659,067 - BPHYT_RS02965 0.45 +1.9
659,540 + BPHYT_RS02965 0.89 +1.4
659,543 - BPHYT_RS02965 0.89 +0.2
659,614 - +0.2
659,666 - +1.3
659,666 - +1.0
659,696 - -1.4
659,700 - +0.9
659,892 + +0.9
659,895 + +1.5
659,895 + +2.6
659,896 - -3.1
659,977 + +1.2
659,977 + +1.9
659,977 + +1.9
659,977 + +1.0
659,977 + +1.6
659,977 + +1.8
659,977 + +2.0
659,978 - -3.2
659,981 + +1.6
659,981 + +1.6
659,981 + +1.6
659,981 + +2.0
659,981 + +2.3
659,981 + +1.7
659,981 + +2.1
659,982 - +0.3
659,982 - +2.1
659,982 - -0.3
659,983 + +1.4
659,983 + +2.6
660,022 + BPHYT_RS02970 0.11 +1.6
660,022 + BPHYT_RS02970 0.11 +0.8
660,022 + BPHYT_RS02970 0.11 +1.1
660,022 + BPHYT_RS02970 0.11 +1.6
660,084 - BPHYT_RS02970 0.13 -0.4
660,152 + BPHYT_RS02970 0.16 +1.7
660,152 + BPHYT_RS02970 0.16 +0.8
660,203 + BPHYT_RS02970 0.18 +1.1
660,204 - BPHYT_RS02970 0.18 +0.6
660,230 + BPHYT_RS02970 0.19 +0.6
660,263 + BPHYT_RS02970 0.20 +0.7
660,263 + BPHYT_RS02970 0.20 +0.3
660,263 + +0.4
660,264 - BPHYT_RS02970 0.20 +0.8
660,337 + BPHYT_RS02970 0.22 +0.6
660,338 - BPHYT_RS02970 0.22 -0.1
660,431 + BPHYT_RS02970 0.26 +1.2
660,431 + BPHYT_RS02970 0.26 +0.6
660,431 + BPHYT_RS02970 0.26 +1.2
660,431 + BPHYT_RS02970 0.26 -1.2
660,432 - BPHYT_RS02970 0.26 -1.6
660,575 + BPHYT_RS02970 0.31 +0.9
660,764 + BPHYT_RS02970 0.37 +1.6
660,764 + BPHYT_RS02970 0.37 +1.1
660,764 + BPHYT_RS02970 0.37 +0.9
660,764 + BPHYT_RS02970 0.37 +0.7
660,764 + BPHYT_RS02970 0.37 +0.2
660,764 + BPHYT_RS02970 0.37 +0.5
660,765 - BPHYT_RS02970 0.37 -0.1
660,765 - BPHYT_RS02970 0.37 +1.1
660,765 - BPHYT_RS02970 0.37 -0.2
660,765 - BPHYT_RS02970 0.37 +0.4
660,869 + BPHYT_RS02970 0.41 +0.7
660,870 - BPHYT_RS02970 0.41 +0.1
661,007 + BPHYT_RS02970 0.46 -0.3
661,007 + BPHYT_RS02970 0.46 +0.5
661,007 + BPHYT_RS02970 0.46 +1.8
661,008 - BPHYT_RS02970 0.46 +0.6
661,008 - BPHYT_RS02970 0.46 +1.8
661,106 + BPHYT_RS02970 0.49 +0.3
661,107 - BPHYT_RS02970 0.49 +1.8
661,107 - BPHYT_RS02970 0.49 +0.5
661,107 - BPHYT_RS02970 0.49 +0.1
661,349 + BPHYT_RS02970 0.57 +0.8
661,429 + BPHYT_RS02970 0.60 +0.8
661,429 + BPHYT_RS02970 0.60 +1.4
661,429 + BPHYT_RS02970 0.60 +2.6
661,429 + BPHYT_RS02970 0.60 +0.4
661,429 + BPHYT_RS02970 0.60 +1.2
661,429 + BPHYT_RS02970 0.60 +0.7
661,430 - BPHYT_RS02970 0.60 +0.4
661,469 + BPHYT_RS02970 0.62 +0.9
661,469 + BPHYT_RS02970 0.62 +0.6
661,469 + BPHYT_RS02970 0.62 +0.9
661,470 - BPHYT_RS02970 0.62 +1.8
661,470 - BPHYT_RS02970 0.62 +1.1
661,991 + BPHYT_RS02970 0.80 +1.0
661,991 + BPHYT_RS02970 0.80 -0.2
661,992 - BPHYT_RS02970 0.80 +1.1
661,992 - BPHYT_RS02970 0.80 +0.4
661,992 - BPHYT_RS02970 0.80 +0.4
661,992 - BPHYT_RS02970 0.80 -1.8
662,217 - BPHYT_RS02970 0.88 +0.4
662,252 + BPHYT_RS02970 0.89 +0.9
662,252 + BPHYT_RS02970 0.89 +2.2
662,253 - BPHYT_RS02970 0.89 +0.6
662,253 - BPHYT_RS02970 0.89 +0.6
662,394 - +0.6
662,414 + +0.5
662,415 - +0.2
662,415 - -0.6
662,510 - +0.4
662,610 - +0.8
662,618 + +0.5
662,618 + +0.7
662,618 + -0.1
662,618 + +1.2
662,621 + +1.0
662,621 + +2.4
662,621 + +0.7
662,621 + -1.2
662,621 + +0.7
662,687 + +0.7
662,745 - -1.8
663,147 + BPHYT_RS02975 0.16 -2.5

Or see this region's nucleotide sequence