Experiment: LB, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00435 and BPHYT_RS00440 are separated by 256 nucleotides BPHYT_RS00440 and BPHYT_RS00445 are separated by 379 nucleotides BPHYT_RS00445 and BPHYT_RS00450 overlap by 1 nucleotides
BPHYT_RS00435: BPHYT_RS00435 - membrane protein, at 107,899 to 109,056
_RS00435
BPHYT_RS00440: BPHYT_RS00440 - ripening-induced protein-Zn-containing oxidoreductase, at 109,313 to 109,513
_RS00440
BPHYT_RS00445: BPHYT_RS00445 - prevent-host-death protein, at 109,893 to 110,165
_RS00445
BPHYT_RS00450: BPHYT_RS00450 - DNA-binding protein, at 110,165 to 110,578
_RS00450
Position (kb)
109
110 Strain fitness (log2 ratio)
-2
-1
0
1 at 108.344 kb on + strand, within BPHYT_RS00435 at 108.370 kb on + strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.371 kb on - strand, within BPHYT_RS00435 at 108.412 kb on + strand, within BPHYT_RS00435 at 108.412 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.433 kb on + strand, within BPHYT_RS00435 at 108.434 kb on - strand, within BPHYT_RS00435 at 108.434 kb on - strand, within BPHYT_RS00435 at 108.434 kb on - strand, within BPHYT_RS00435 at 108.434 kb on - strand, within BPHYT_RS00435 at 108.434 kb on - strand, within BPHYT_RS00435 at 108.542 kb on + strand, within BPHYT_RS00435 at 108.543 kb on - strand, within BPHYT_RS00435 at 108.543 kb on - strand, within BPHYT_RS00435 at 108.549 kb on + strand, within BPHYT_RS00435 at 108.549 kb on + strand, within BPHYT_RS00435 at 108.755 kb on + strand, within BPHYT_RS00435 at 108.900 kb on + strand, within BPHYT_RS00435 at 108.900 kb on + strand, within BPHYT_RS00435 at 108.900 kb on + strand, within BPHYT_RS00435 at 108.949 kb on + strand at 108.950 kb on - strand at 109.162 kb on - strand at 109.219 kb on + strand at 109.220 kb on - strand at 109.307 kb on - strand at 109.397 kb on - strand, within BPHYT_RS00440 at 109.397 kb on - strand, within BPHYT_RS00440 at 109.455 kb on - strand, within BPHYT_RS00440 at 109.457 kb on - strand, within BPHYT_RS00440 at 109.501 kb on + strand at 109.501 kb on + strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.502 kb on - strand at 109.503 kb on + strand at 109.503 kb on + strand at 109.504 kb on - strand at 109.504 kb on - strand at 109.504 kb on - strand at 109.557 kb on + strand at 109.586 kb on + strand at 109.586 kb on + strand at 109.587 kb on - strand at 109.587 kb on - strand at 109.629 kb on + strand at 109.629 kb on + strand at 109.629 kb on + strand at 109.650 kb on - strand at 109.650 kb on - strand at 109.650 kb on - strand at 109.650 kb on - strand at 109.749 kb on + strand at 109.832 kb on - strand at 110.291 kb on + strand, within BPHYT_RS00450 at 110.291 kb on + strand, within BPHYT_RS00450 at 110.295 kb on + strand, within BPHYT_RS00450 at 110.295 kb on + strand, within BPHYT_RS00450 at 110.295 kb on + strand, within BPHYT_RS00450 at 110.295 kb on + strand, within BPHYT_RS00450 at 110.310 kb on + strand, within BPHYT_RS00450 at 110.317 kb on - strand, within BPHYT_RS00450 at 110.397 kb on + strand, within BPHYT_RS00450 at 110.397 kb on + strand, within BPHYT_RS00450 at 110.486 kb on + strand, within BPHYT_RS00450
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 37C remove 108,344 + BPHYT_RS00435 0.38 -0.8 108,370 + BPHYT_RS00435 0.41 -0.0 108,371 - BPHYT_RS00435 0.41 +0.8 108,371 - BPHYT_RS00435 0.41 -0.3 108,371 - BPHYT_RS00435 0.41 +0.1 108,371 - BPHYT_RS00435 0.41 +0.1 108,371 - BPHYT_RS00435 0.41 +0.8 108,371 - BPHYT_RS00435 0.41 +0.3 108,371 - BPHYT_RS00435 0.41 -0.4 108,412 + BPHYT_RS00435 0.44 -0.4 108,412 + BPHYT_RS00435 0.44 -0.0 108,433 + BPHYT_RS00435 0.46 +0.3 108,433 + BPHYT_RS00435 0.46 -0.1 108,433 + BPHYT_RS00435 0.46 +0.7 108,433 + BPHYT_RS00435 0.46 -0.2 108,433 + BPHYT_RS00435 0.46 +0.3 108,433 + BPHYT_RS00435 0.46 -0.0 108,434 - BPHYT_RS00435 0.46 -0.1 108,434 - BPHYT_RS00435 0.46 -0.2 108,434 - BPHYT_RS00435 0.46 -1.1 108,434 - BPHYT_RS00435 0.46 -1.3 108,434 - BPHYT_RS00435 0.46 -1.7 108,542 + BPHYT_RS00435 0.56 -0.0 108,543 - BPHYT_RS00435 0.56 -0.4 108,543 - BPHYT_RS00435 0.56 -0.5 108,549 + BPHYT_RS00435 0.56 +1.3 108,549 + BPHYT_RS00435 0.56 -0.1 108,755 + BPHYT_RS00435 0.74 -0.7 108,900 + BPHYT_RS00435 0.86 +0.2 108,900 + BPHYT_RS00435 0.86 +0.4 108,900 + BPHYT_RS00435 0.86 -0.2 108,949 + -0.4 108,950 - +0.2 109,162 - +0.1 109,219 + -0.4 109,220 - -0.4 109,307 - -1.1 109,397 - BPHYT_RS00440 0.42 +1.0 109,397 - BPHYT_RS00440 0.42 +0.1 109,455 - BPHYT_RS00440 0.71 +0.5 109,457 - BPHYT_RS00440 0.72 +1.6 109,501 + -0.3 109,501 + -0.0 109,502 - +0.7 109,502 - +1.5 109,502 - +0.4 109,502 - +0.3 109,502 - +0.1 109,502 - -0.2 109,502 - -0.6 109,502 - -0.5 109,502 - -0.1 109,503 + -0.3 109,503 + -0.3 109,504 - +0.5 109,504 - -0.2 109,504 - -0.6 109,557 + -1.7 109,586 + -0.3 109,586 + +0.6 109,587 - +0.5 109,587 - +0.1 109,629 + -1.2 109,629 + +0.6 109,629 + -0.5 109,650 - -0.7 109,650 - -0.3 109,650 - +0.1 109,650 - +0.1 109,749 + -0.4 109,832 - +0.2 110,291 + BPHYT_RS00450 0.30 -0.3 110,291 + BPHYT_RS00450 0.30 -1.0 110,295 + BPHYT_RS00450 0.31 +0.1 110,295 + BPHYT_RS00450 0.31 +0.2 110,295 + BPHYT_RS00450 0.31 -0.1 110,295 + BPHYT_RS00450 0.31 +0.0 110,310 + BPHYT_RS00450 0.35 -1.8 110,317 - BPHYT_RS00450 0.37 +0.6 110,397 + BPHYT_RS00450 0.56 -0.3 110,397 + BPHYT_RS00450 0.56 -0.4 110,486 + BPHYT_RS00450 0.78 -0.5
Or see this region's nucleotide sequence